PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20828.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 530aa    MW: 58707.3 Da    PI: 5.7935
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20828.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.4e-11226282155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g
  mrna20828.1-v1.0-hybrid 226 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDMEDKAARAYDLAALKYWG 282
                              57*******************4444.2344335555.77***99*************98 PP
2AP2491.5e-15327376355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  mrna20828.1-v1.0-hybrid 327 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 376
                              9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-14226292IPR016177DNA-binding domain
PfamPF008473.2E-9226282IPR001471AP2/ERF domain
CDDcd000181.52E-18226292No hitNo description
Gene3DG3DSA:3.30.730.105.5E-12227291IPR001471AP2/ERF domain
PROSITE profilePS5103217.28227290IPR001471AP2/ERF domain
SMARTSM003807.6E-22227296IPR001471AP2/ERF domain
PRINTSPR003674.5E-6228239IPR001471AP2/ERF domain
CDDcd000189.76E-11325384No hitNo description
SuperFamilySSF541711.11E-17325385IPR016177DNA-binding domain
PROSITE profilePS5103219.269326384IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-18326384IPR001471AP2/ERF domain
SMARTSM003803.3E-30326390IPR001471AP2/ERF domain
PfamPF008477.2E-10327376IPR001471AP2/ERF domain
PRINTSPR003674.5E-6366386IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MEMLRSASES ESPFAQAYDT SAATVPSPQY YLDNFYTNGW TNPKAEVFYT EGEEERTKLA  60
SFIDPQTQNQ PIPKLEDFLG DSMVRYADSQ TETQDSSLTQ IYDQGSAYFG DQQHHNQDLK  120
AITGFQAFSA NSGSEVEDSA SMARTTQLAC AEFTGHSVES IGNELGFSSC GGSAAAGATT  180
NTSNALSLGV ANTTANTQSS NREKAIVAVE NDSNKKISDT FGQRTSIYRG VTRHRWTGRY  240
EAHLWDNSCR REGQARKGRQ GGYDMEDKAA RAYDLAALKY WGPTATTNFP ISTYSKELED  300
MKLVTKQEFI ASLRRKSSGF SRGASMYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE  360
EEAAEAYDIA AIKFRGINAV TNFEMNRYDV EAISKSSLPV GSSAKRLKIS LESEEQKSSV  420
NNRDLHQQQN SQCSSGSNSN TINFANSMAQ PIQTIPCGIP YDHAAAFYHH NLLQQFQSYN  480
YYGTTSDSSA VSQPNIATSQ MTMAMMPQQQ EQQQPAEFFL WPQYQTHQS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20828.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468677.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_011468682.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A3Q8TEF10.0A0A3Q8TEF1_FRAAN; Transcription factor AP24
STRINGXP_004288525.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-174AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]