PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20797.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 215aa    MW: 23607.7 Da    PI: 10.9394
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20797.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.9e-124692354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                             ++h+e ErrRR riNs ++ Lr++lP++      K++Ka++L ++v+ +++L
  mrna20797.1-v1.0-hybrid 46 KKHSESERRRRMRINSQYAALRKILPNL-----IKMDKASVLAETVRQVREL 92
                             68*************************9.....6************988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.7734392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-94692IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-44696No hitNo description
SuperFamilySSF474598.51E-1347101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-1347100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-104998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.12E-6132198No hitNo description
PROSITE profilePS516719.109133213IPR002912ACT domain
Gene3DG3DSA:3.30.70.2607.7E-7135196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGSAPSYFSK QIGFPQRYGI GQVNSIYSKK FTKSLSTAEA KVFSAKKHSE SERRRRMRIN  60
SQYAALRKIL PNLIKMDKAS VLAETVRQVR ELKKVVTDID AACRGSGSEC VIPSGVNKLS  120
LEKCEGKQEG LVKATFSCED RAGLISDMTR ELRSRKGKVV KAEMVTVGGR TKIVLWVKGL  180
GAGSEGIVSL KKALNKVIVD RPSIIQKLHL PKRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20797.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289527.11e-155PREDICTED: transcription factor bHLH131-like
TrEMBLA0A2P6RQ071e-117A0A2P6RQ07_ROSCH; Putative transcription factor bHLH family
STRINGXP_004289527.11e-154(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-42bHLH family protein