PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna20756.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | GATA | ||||||||
Protein Properties | Length: 228aa MW: 24909.1 Da PI: 8.6946 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56 | 5.5e-18 | 149 | 182 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cgt +Tp+WR gp g+ktLCnaCG++y++ + mrna20756.1-v1.0-hybrid 149 CLHCGTDQTPQWRAGPHGPKTLCNACGVRYKSGR 182 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.3E-14 | 143 | 193 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.36 | 143 | 179 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.23E-15 | 145 | 206 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.4E-15 | 145 | 180 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.68E-16 | 148 | 199 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 149 | 174 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.4E-16 | 149 | 183 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MVPLDPAACL VDDLRNFLSD VADHDARPDD PSRPLVPTEE AEEELEWISN KDAFPAVETF 60 ILSEQVGGIA IAKHQSPVSV LETSTNSSSA SLMSSCGGLK PPHRARTKGR RRRSEIPPQQ 120 LFWNQPPIES SKPSRSSGSA SKLDIGRKCL HCGTDQTPQW RAGPHGPKTL CNACGVRYKS 180 GRLCPEYRPA SSPSFSSQMH SNSHRKVLEM RKHKYGVGMV VKPEDKG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna20756.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309758.1 | 1e-168 | PREDICTED: GATA transcription factor 1 | ||||
Swissprot | Q8LAU9 | 1e-46 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A2P6QRV0 | 1e-122 | A0A2P6QRV0_ROSCH; Putative transcription factor C2C2-GATA family | ||||
STRING | XP_004309758.1 | 1e-168 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8537 | 29 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 3e-37 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | mrna20756.1-v1.0-hybrid |