PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20754.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 483aa    MW: 53679.2 Da    PI: 8.6132
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20754.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.2e-15172204133
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                              C++Cg ++Tp+WR+gp g  tLCnaCG++y + 
  mrna20754.1-v1.0-hybrid 172 CTHCGISQTPQWREGPLGRNTLCNACGIRYISG 204
                              *****************************9665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.2189134IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.477166201IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-11166216IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-14168229No hitNo description
Gene3DG3DSA:3.30.50.106.8E-13170201IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.0E-13172203IPR000679Zinc finger, GATA-type
PROSITE patternPS003440172197IPR000679Zinc finger, GATA-type
CDDcd002024.49E-13172228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MVSLDPDDFL AGLADVPDHP SRPFPEKLAE EEELEWISNK ELFPSVETCM LPEEPPGLRK  60
AISNAEQGNG ALSLQEMPSR KTKHDNAKAK SMRVCTFCGV AQTLQGALGV CNVCGFIYKS  120
GRCCAEEESP KVQSIKSDNV KKRIKSDKVK SSKSDKVKSI ESDKVNSIKR MCTHCGISQT  180
PQWREGPLGR NTLCNACGIR YISGRLCPEY RPANSPTFSQ GLHSNNHRKI MEMRNQIFGI  240
KGTVANPVDK CTNSEATMTL EKLKNIFPSV ATRNIVEQPS RSVIAEQQSP ISVLENNTNS  300
STTLVSHQPP NKVLRQQHLF SNQLNNKHNQ EDTAKVEVEI NSTILMSSHG SVKLSYKVPS  360
KVLEQQQLFS CQPTNKCRKK NTVEVKNERI NATLMSSCDN LEPPHQAPSE FLEHHQLFND  420
QPINNCNNKH TAKVDLTMKA GDIRIDQRVR DKGQFIVLIS KLGESLSIGY VVKQILIFCP  480
AA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20754.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011471048.10.0PREDICTED: GATA zinc finger domain-containing protein 5-like isoform X3
TrEMBLA0A2P6QRU40.0A0A2P6QRU4_ROSCH; Putative transcription factor C2C2-GATA family
STRINGXP_004309769.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-30GATA transcription factor 5