PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna20754.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 483aa MW: 53679.2 Da PI: 8.6132 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.7 | 2.2e-15 | 172 | 204 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C++Cg ++Tp+WR+gp g tLCnaCG++y + mrna20754.1-v1.0-hybrid 172 CTHCGISQTPQWREGPLGRNTLCNACGIRYISG 204 *****************************9665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 0.21 | 89 | 134 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.477 | 166 | 201 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.1E-11 | 166 | 216 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.61E-14 | 168 | 229 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.8E-13 | 170 | 201 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 3.0E-13 | 172 | 203 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 172 | 197 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 4.49E-13 | 172 | 228 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 483 aa Download sequence Send to blast |
MVSLDPDDFL AGLADVPDHP SRPFPEKLAE EEELEWISNK ELFPSVETCM LPEEPPGLRK 60 AISNAEQGNG ALSLQEMPSR KTKHDNAKAK SMRVCTFCGV AQTLQGALGV CNVCGFIYKS 120 GRCCAEEESP KVQSIKSDNV KKRIKSDKVK SSKSDKVKSI ESDKVNSIKR MCTHCGISQT 180 PQWREGPLGR NTLCNACGIR YISGRLCPEY RPANSPTFSQ GLHSNNHRKI MEMRNQIFGI 240 KGTVANPVDK CTNSEATMTL EKLKNIFPSV ATRNIVEQPS RSVIAEQQSP ISVLENNTNS 300 STTLVSHQPP NKVLRQQHLF SNQLNNKHNQ EDTAKVEVEI NSTILMSSHG SVKLSYKVPS 360 KVLEQQQLFS CQPTNKCRKK NTVEVKNERI NATLMSSCDN LEPPHQAPSE FLEHHQLFND 420 QPINNCNNKH TAKVDLTMKA GDIRIDQRVR DKGQFIVLIS KLGESLSIGY VVKQILIFCP 480 AA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna20754.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011471048.1 | 0.0 | PREDICTED: GATA zinc finger domain-containing protein 5-like isoform X3 | ||||
TrEMBL | A0A2P6QRU4 | 0.0 | A0A2P6QRU4_ROSCH; Putative transcription factor C2C2-GATA family | ||||
STRING | XP_004309769.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66320.2 | 2e-30 | GATA transcription factor 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna20754.1-v1.0-hybrid |