PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20703.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Dof
Protein Properties Length: 367aa    MW: 38605.4 Da    PI: 8.6512
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20703.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.57.9e-4043103262
                   zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                              +e+alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+++
  mrna20703.1-v1.0-hybrid  43 PEQALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKRVR 103
                              6899******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-2834101IPR003851Zinc finger, Dof-type
PfamPF027013.4E-3345101IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.50647101IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104985IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MMSSDNSPAK KQADDTQQGG GGGGGGGGGT GNSRKTTSSK APPEQALKCP RCDSPNTKFC  60
YYNNYSLTQP RHFCKTCRRY WTKGGALRNV PIGGGCRKNK RVRSSSSRLS CSLDSKDSGD  120
SASDHMGLKF FHGISPAMDF QLGGLSLPRL NHHPSSSSAV VTALYNNNNN SQFSPYGDVS  180
VTSGLTLDPS GGATGNNSFM GFNYPLTLGS GSGGGVGFHQ NNMNTAMNVH SSLASSIESL  240
SSINQDLHWK LQQQRLSMLF GTSIAGDSQT QPSQKDLQMN DLEKTQTAAP ILFQNLEISK  300
PKESAGGGDT AATEWFFGNS YAPPPVTPTP TNSGGNGGGN ENNAGNWNSH GVVQAWGDLQ  360
QYNALP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20703.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289514.10.0PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBLA0A2P6RPT60.0A0A2P6RPT6_ROSCH; Putative transcription factor C2C2-Dof family
STRINGXP_004289514.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.12e-52Dof family protein