PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna20650.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | EIL | ||||||||
Protein Properties | Length: 742aa MW: 81847.4 Da PI: 6.5613 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 435.3 | 5.7e-133 | 37 | 374 | 1 | 320 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpveg 86 eel++rmwkd+++lkr+ke++k e++ a++++k ++s++qarrkkmsraQDgiLkYMlk mevc+a+GfvYgiipekgkpv+g mrna20650.1-v1.0-hybrid 37 EELERRMWKDRIKLKRIKEKQKL--EAQM-AAEKQKPKQSSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSG 119 8**************99999886..4455.599***************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH CS EIN3 87 asdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPW 172 asd++raWWkekv+fd+ngpaai ky+a+ l++++++ + ++ ++++ l++lqD+tlgSLLs+lmqhcdppqr++plekg++pPW mrna20650.1-v1.0-hybrid 120 ASDNIRAWWKEKVKFDKNGPAAIGKYEAEILAMTDADTN--RNGNSQSILQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGIPPPW 203 *****************************9999988887..67999999************************************* PP ---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S- CS EIN3 173 WPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekeca 258 WPtG+e+ww +lg+++ q+ ppykkphdlkk+wkv+vLtavikhmsp+i++ir+++rqsk+lqdkm+akes+++l vl++ee++++ mrna20650.1-v1.0-hybrid 204 WPTGNEDWWVKLGIPHGQS-PPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREEALIR 288 ******************9.9***************************************************************** PP -XXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX........................XXXXXXXXXX CS EIN3 259 tvsahss........slrkqspkvtlsceqkedvegkkeskikhvqavktta........................gfpvvrkrkk 312 + s+++ +++++ t+s ++++dv+g++++ i + + ++ + g k k mrna20650.1-v1.0-hybrid 289 QPSSDNGtsgitemlCRGRGEKHATASGNSDYDVDGTDKELIDAGSVSSKDDrrtelidvepssnlrngtttnrvqG-----KEK- 368 *****444567776433349999************888888664333333335568888888888888655332221.....222. PP XXXXXXXX CS EIN3 313 kpsesakv 320 +e+++ mrna20650.1-v1.0-hybrid 369 --GEKRTK 374 ..222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 2.5E-126 | 37 | 284 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 4.5E-72 | 159 | 292 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 1.44E-62 | 165 | 288 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042762 | Biological Process | regulation of sulfur metabolic process | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 742 aa Download sequence Send to blast |
MGDLGEVGPE ISSDIEEDLR CDNIAEKDVS DEEIDPEELE RRMWKDRIKL KRIKEKQKLE 60 AQMAAEKQKP KQSSDQARRK KMSRAQDGIL KYMLKLMEVC KARGFVYGII PEKGKPVSGA 120 SDNIRAWWKE KVKFDKNGPA AIGKYEAEIL AMTDADTNRN GNSQSILQDL QDATLGSLLS 180 SLMQHCDPPQ RKYPLEKGIP PPWWPTGNED WWVKLGIPHG QSPPYKKPHD LKKMWKVGVL 240 TAVIKHMSPD IAKIRRHVRQ SKCLQDKMTA KESAIWLGVL SREEALIRQP SSDNGTSGIT 300 EMLCRGRGEK HATASGNSDY DVDGTDKELI DAGSVSSKDD RRTELIDVEP SSNLRNGTTT 360 NRVQGKEKGE KRTKRKRSPV RPSSDDQLPA PIVSEHMHVE PINALLDINH TDAQMIGFPI 420 HEDHQENVSV TTLRPQVHDL GVQALPASGF NYYADVPDDG ALATTQSMHV GGTPMLYYGV 480 QSAEMHHGNM FDLYNPSAEY VPGHERQQSQ IVMNEPQIGP ADGVPIQTVR NGNEITGGDL 540 PFYKDPFLSE QDRMVDPNFD LGVIFNSPFR PDLGFEGTAS FDDELDAFRT RMSCSTPGAL 600 SSPKLTSSSK DNPALVNFPF SGTCMGVSLV FPSSLAPISG AGTDNINKIR MGHSKLALNW 660 VLILVLVLMA ASVSSVESSR KCLQVGTSKT SENKGTQGIQ IKEADRAYGN GAKVFSTVDN 720 SDRLVPTGPD PLHHNNNPIK P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wij_A | 2e-75 | 164 | 295 | 9 | 140 | ETHYLENE-INSENSITIVE3-like 3 protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00233 | DAP | Transfer from AT1G73730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna20650.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004295232.1 | 0.0 | PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein | ||||
Swissprot | O23116 | 0.0 | EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein | ||||
TrEMBL | A0A482EUX8 | 0.0 | A0A482EUX8_9ROSA; Ethylene-insensitive 3-like 1 protein | ||||
STRING | XP_004295232.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF322 | 34 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73730.1 | 0.0 | ETHYLENE-INSENSITIVE3-like 3 |
Link Out ? help Back to Top | |
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Phytozome | mrna20650.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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