PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20579.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 753aa    MW: 85759.5 Da    PI: 9.4057
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20579.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1371.1e-1150130491
                     FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                              + YA ++G  +r+++++k+  +g  +  ++vC +  + ++ k++     ++++++ tgC  +++  +++dg++++t++ leHnH+l
  mrna20579.1-v1.0-hybrid  50 KYYAMKTGWAIRTRSNSKR--DGALKYVQLVCLRAFRGKSLKES-----EPKSSQITGCSTRIRAVLNSDGEYKLTTICLEHNHHL 128
                              679*********9987766..999********998766665555.....89999******************************** PP

                     FAR1  90 ap 91 
                              +p
  mrna20579.1-v1.0-hybrid 129 CP 130
                              96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-949130IPR004330FAR1 DNA binding domain
PROSITE profilePS506009.933506711IPR003653Ulp1 protease family, C-terminal catalytic domain
SuperFamilySSF540017.46E-21583736No hitNo description
PfamPF029021.9E-7594731IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1304.0E-7615705No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0008234Molecular Functioncysteine-type peptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MDGNNTSQVP YVEEDDLIAS NEVDLELDDR DILKTGMIFS CYGVMYDYCK YYAMKTGWAI  60
RTRSNSKRDG ALKYVQLVCL RAFRGKSLKE SEPKSSQITG CSTRIRAVLN SDGEYKLTTI  120
CLEHNHHLCP EATRRIRQYR GLDQHSKHRF SSNQDAGVRP SKNIHAILTE KGGYANLGYT  180
VKDAQNFINK RTTLKLQSDA YTNVEFKEFQ DELRANVYCN SWPVKEEGAR CTHKVTESRF  240
KKKRKGGRKQ KLFLKASVKK ELKHIISLLI QREVATVSDK YVLTRWKKSL KRKYSLIKGC  300
YDDPKFKEVR TLQKKMLEAF HDLVNFVEGK MQTDIVLQGI TELKAKVIQS KPVPNLKVDS  360
SSLEEPETTK KILDPKVVKR VGRPTFKRKI SKAEEVIQRA KKRRYNRKVT QSTMTKKLSK  420
NTVEYENGCD IGVNDSTSPH VYDPPKTPTM SGNIKSTAFR VDSTPISNSG YPITPPNFYT  480
HGSNLSTNLS GQIFHNVKME YDIGGDCIVN QDAASINNLS TGVCSFSQLL NMVSLVGSTV  540
PKSSIGYMEV REQCGTNGTT TSMSILERQV LDYIFDRSLL KQKKGQMEET LSQIDGFSIK  600
RDEIIVLQDH SWLGDQLIFP VCLHSHWVAF AIDLMKHKIE ILDTLYDKIL PGLDEIIYGV  660
LIILEELSKD FGEVIFNHKM YSTDTIPLAK IVRQENTWDC GVLLIKVMES WYGKITTEID  720
KDMADKYRLD IATSIVLSHH NELRNQIIEK AT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386403KRKISKAEEVIQRAKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20579.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3450622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-10FAR1-related sequence 5