PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna20567.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 287aa MW: 31495.7 Da PI: 9.5722

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna20567.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.4	1.5e-38	31	90	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprC+s+ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k+++ mrna20567.1-v1.0-hybrid 31 HEPQKCPRCESHNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKGKRAK 90 6789***************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-25	32	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-33	33	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MQGEQDQPQQ HNNQDEKVNQ QQQQHGQQHH HEPQKCPRCE SHNTKFCYYN NYSLSQPRYF 60 CKACRRYWTQ GGTLRNVPVG GGCRKGKRAK TMSSTSSSRS VFIQPHQQPQ DHHQRSLMMS 120 SGPSATLNSL PGSQYYLGGA GYLTSMPFSQ NITHLGGSSQ LGLGGGASNL GLLHGFNAIP 180 SSGQRHMQNH LFRSNMEPST LYPSKDHRGM LLQPTRSSGV MTDWHESFIS KSHASTTNVV 240 VSTGQNAMWS ATIGNNTGTT SSADASINST QWSDDLTRSF APGPPQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna20567.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004289545.1	0.0	PREDICTED: dof zinc finger protein DOF3.1-like
TrEMBL	A0A2P6Q461	1e-119	A0A2P6Q461_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004289545.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	3e-33	Dof family protein

Link Out ? help Back to Top
Phytozome	mrna20567.1-v1.0-hybrid