PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna20491.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 190aa MW: 21832.8 Da PI: 9.0701 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.1 | 4.2e-20 | 84 | 144 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t++++qle+Le+ +++ n +p +++ +e++k+l ++te++V++WFqNrRa+ k+ mrna20491.1-v1.0-hybrid 84 RQRWTPSNTQLEILERIYNEaNGTPGKHRVKEITKELsqhgHVTETNVYNWFQNRRARSKR 144 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 93.5 | 1.9e-30 | 83 | 146 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP+++Q++iLe++y+++ tP k+++++it+eL+++G+++++NV++WFQNr+aR+++kq mrna20491.1-v1.0-hybrid 83 ARQRWTPSNTQLEILERIYNEANGTPGKHRVKEITKELSQHGHVTETNVYNWFQNRRARSKRKQ 146 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.349 | 80 | 145 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-16 | 80 | 148 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.42E-18 | 82 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.3E-11 | 82 | 149 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-17 | 84 | 144 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.44E-12 | 84 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 190 aa Download sequence Send to blast |
MEGQRRVLAV KLERLRTQNP DGFCVMTDDQ VEQLQKQIAV YAVICEQLVD MHKAFTAQQD 60 LAGMKMGNVY GDLMPFGGNK VTARQRWTPS NTQLEILERI YNEANGTPGK HRVKEITKEL 120 SQHGHVTETN VYNWFQNRRA RSKRKQSVPT RNMTELDIEP EVISPKDKKT KPEDMYFRSP 180 DSGIENFFA* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 137 | 145 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna20491.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300539.1 | 1e-138 | PREDICTED: WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 2e-59 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A2P6PBJ9 | 1e-121 | A0A2P6PBJ9_ROSCH; Putative transcription factor Homobox-WOX family | ||||
STRING | XP_004300539.1 | 1e-137 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35550.1 | 9e-57 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna20491.1-v1.0-hybrid |
Publications ? help Back to Top | |||
---|---|---|---|
|