PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20482.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 423aa    MW: 47767.1 Da    PI: 4.2303
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20482.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.81.3e-2091432128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk....kvka.....eekewyfFskrdkkyatgkrknr 76 
                               pG rF P d+elv +yLk+ ++g++++  +  + ++d+y k ePw++ +    +         +k++yfF+++++ ++t+kr +r
  mrna20482.1-v1.0-hybrid   9 LPGQRFCPMDDELVLFYLKPMLSGENVPGRNRlVFDCDLYgKQEPWEIWEdfktR--RpqdlrLNKDIYFFTQHKTISSTDKRIRR 92 
                              59************************88877669999*99456*****7524331..23333334588****************** PP

                      NAM  77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               + sg+W++    k+v+s  +g++vglkk L++ + ++ +  +  W++ e+ l
  mrna20482.1-v1.0-hybrid  93 NVGSGTWRSDDFGKPVVSVeTGRVVGLKKRLTYKNVDSVQ--NGCWILYEFFL 143
                              **********99999998768999*********9655555..899*****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.4648165IPR003441NAC domain
SuperFamilySSF1019415.36E-239164IPR003441NAC domain
PfamPF023651.7E-1310141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MEESRGTQLP GQRFCPMDDE LVLFYLKPML SGENVPGRNR LVFDCDLYGK QEPWEIWEDF  60
KTRRPQDLRL NKDIYFFTQH KTISSTDKRI RRNVGSGTWR SDDFGKPVVS VETGRVVGLK  120
KRLTYKNVDS VQNGCWILYE FFLDRSLRDK KRKLKDYVLC LLRKNGEPKT KIAKKRKQRE  180
EEDEVLENND ACDDTEISRG EQEELLEAQA KKQRTAPSID SAPPTMPSQD DDAFAAELQE  240
TLECVEDNYA PLLEAEASSF RGDEENFGQQ PLAANHGIFN QLQEKDRFEE FLDRLSTEEM  300
EEMAEILFYG MSSNIDVAEQ NVVNSSTLHD APVSSMSAAY DYGTAIPCLS SENGCIDTSG  360
CNDVGGGVMG YEDGVCMPEP LVEVAADEQQ KTPDDDLSDL LGSIDFSPEA NNFFCSEPQL  420
CS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167176PKTKIAKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20482.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465406.10.0PREDICTED: uncharacterized protein LOC105351744
TrEMBLA0A2P6PAF80.0A0A2P6PAF8_ROSCH; Putative transcription factor NAM family
STRINGXP_004306296.11e-115(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.29e-15NAC domain containing protein 38