PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna20347.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | HSF | ||||||||
Protein Properties | Length: 483aa MW: 54848.1 Da PI: 7.4567 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.7 | 5.2e-35 | 165 | 256 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k+y++++d+++++++sws+ g sfvv+d++++ ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F mrna20347.1-v1.0-hybrid 165 FLNKTYDMVDDPSTNRIVSWSRAGGSFVVWDPHSLVMNLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFL 241 9****************************************************************999.........********* PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 +g+k+ll++i+r+k+ mrna20347.1-v1.0-hybrid 242 RGQKHLLKNIRRRKT 256 *************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.09E-34 | 161 | 254 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.0E-61 | 161 | 254 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 7.9E-38 | 161 | 254 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.6E-31 | 165 | 254 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-20 | 165 | 188 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-20 | 203 | 215 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 204 | 228 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-20 | 216 | 228 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MARLINATHH VVLDIVVQTQ SAATRDTPIY VIATNSRYNM HHRVLRHSPC QESNAGAQPH 60 CLSEMSQKHQ NHLDQEQHRA RPPWRTLERV WIRIVTWKQA SKAALPEPGL IEVSPDKFGC 120 KIRTKTVKEE YPGDSSTSQY WSGDPLVVAP PQPMEGLNDT GPPPFLNKTY DMVDDPSTNR 180 IVSWSRAGGS FVVWDPHSLV MNLLPRYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF 240 LRGQKHLLKN IRRRKTPSHQ PIPPHQAVGP CVEVGRFGLD GEIDRLRRDK QVLMMELVKL 300 RQQQQSTRAC LQAMEQRLQG TERKQQQMMA FLARAMQNPA FLQQLVQHKE KRKELEGAVT 360 KKRRRPIDQG PSGFGGGETN LRGNGISPVK AESLEFGDGY YEMSELEALA MEMQGFGKAR 420 KELEEESEPL EIGDKELDEG FWDELFSERF EGGLSTPSAE IGDDEDVIIL ADRLGYLGST 480 PS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-24 | 163 | 256 | 18 | 122 | Heat shock factor protein 1 |
5d5u_B | 3e-24 | 163 | 256 | 27 | 131 | Heat shock factor protein 1 |
5d5v_B | 3e-24 | 163 | 256 | 27 | 131 | Heat shock factor protein 1 |
5d5v_D | 3e-24 | 163 | 256 | 27 | 131 | Heat shock factor protein 1 |
5hdg_A | 2e-24 | 163 | 256 | 8 | 112 | Heat shock factor protein 1 |
5hdn_A | 2e-24 | 163 | 256 | 8 | 112 | Heat shock factor protein 1 |
5hdn_B | 2e-24 | 163 | 256 | 8 | 112 | Heat shock factor protein 1 |
5hdn_C | 2e-24 | 163 | 256 | 8 | 112 | Heat shock factor protein 1 |
5hdn_D | 2e-24 | 163 | 256 | 8 | 112 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 350 | 364 | KRKELEGAVTKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna20347.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP013985 | 1e-31 | KP013985.1 Populus simonii heat shock transcription factor A6b1 (HsfA6b1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290633.1 | 0.0 | PREDICTED: heat stress transcription factor A-7a | ||||
Swissprot | Q9LUH8 | 1e-126 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A1B0VCU2 | 0.0 | A0A1B0VCU2_FRAVE; Heat shock factor A6a | ||||
STRING | XP_004290633.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-119 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | mrna20347.1-v1.0-hybrid |