PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20152.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 493aa    MW: 53099.2 Da    PI: 6.3564
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20152.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.3e-31242300259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  mrna20152.1-v1.0-hybrid 242 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 300
                              699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.925236302IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-31238302IPR003657WRKY domain
SuperFamilySSF1182903.53E-26239302IPR003657WRKY domain
SMARTSM007741.4E-37241301IPR003657WRKY domain
PfamPF031061.1E-25243300IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MPIGMENYQG DLTDILRAGA AATGSSSSSA YHSETMNSES WQFSSDDNHS MKFSTSIAMG  60
EEVEDARDNF GDPFSSYIRD PLLHELTSST STGGFFSSTP EMNISVDMEA RAAPFGASHV  120
LGQHHHQGEV SKRSACNNIF SRMLQISPGG DVAGCDSVAV LGSSPRGGGG IKAGPGGVMV  180
GSDMINANSS KGCLLENTGV GVQISSPRNP GIKRRKSQAK KVVCIPAPAA ANSRPTGEVV  240
PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP  300
WPTQRNALAG STRSQPSKAG AGSKTSPNTG HHQKPNSPAK EEQKAAADGM NEDNHVLSPV  360
NATVGSSSTV KEEFEDIEKL QLEIDQPLHH HHQHDSDHHH QFSNHDQGFP YRPSMPEQSN  420
NQSEDFFADL GEIEADPLNL LFSQCFTADE QQKGGNKGAM DAFNLFDWSG DQNTNITPNN  480
DPSFGHEAKR GL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-25216303280Disease resistance protein RRS1
5w3x_D3e-25216303280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20152.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293685.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A2P6Q6L80.0A0A2P6Q6L8_ROSCH; Putative transcription factor WRKY family
STRINGXP_004293685.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-80WRKY DNA-binding protein 35