PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20146.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 287aa    MW: 32432.7 Da    PI: 5.377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20146.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.83.3e-07170212855
                              HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              + r RR+ri ++ +eL +l+P        K++ ae+ + A +YIk Lq
  mrna20146.1-v1.0-hybrid 170 AARERRRRITEKTNELGKLVPCG-----SKMNTAEMFQAAYKYIKFLQ 212
                              6699******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.589162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-11167219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-11167220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-9168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-5170212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.59E-4178216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MTAMSTTFCS DWGSLQLLNN NPNPNPDYDQ MFSFQTQQDE LAAASILGLD YSIASSLDDP  60
NPLLLSQSFF SDQDFLLDDH EYYYHDEYPK RQKTQQQFHP SFNGFVPNPS FIPELVRPQL  120
PLPPPEFQIQ QQPAAQLYAN YRLSNEVIST EPKMKANSNG GVSLSPQSIA ARERRRRITE  180
KTNELGKLVP CGSKMNTAEM FQAAYKYIKF LQAQVAMLKL MDSVKANKGH GLHNQEGLQV  240
LASPIVQEKL YSEEKCLVSR EFVETLANNQ DFQSKPLLKD NIAKLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20146.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460417.10.0PREDICTED: transcription factor HEC2
RefseqXP_011460418.10.0PREDICTED: transcription factor HEC2
TrEMBLA0A2P6Q6L71e-158A0A2P6Q6L7_ROSCH; Putative transcription factor bHLH family
STRINGXP_009354039.18e-62(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-22bHLH family protein