PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20083.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 177aa    MW: 19063.6 Da    PI: 8.0622
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20083.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260147.82.8e-46151141100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq
  mrna20083.1-v1.0-hybrid  15 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQ 100
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              ++ l+++lal+++e
  mrna20083.1-v1.0-hybrid 101 IDVLQTQLALAQAE 114
                              *********99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.0414115IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4515112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MKENGCSRKQ GAASPCAACK LLRRRCAQDC VFAPYFPADE PQKFANVHKV FGASNVNKML  60
QELPEHQRGD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ IDVLQTQLAL AQAEVVHLRV  120
RQTASISNHG LSPSSPSNSG SPSSSRFAGS QARPIFDMDM MMDHSSLGLG ESMWSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-51111167112LOB family transfactor Ramosa2.1
5ly0_B2e-51111167112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20083.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293726.11e-129PREDICTED: LOB domain-containing protein 4
SwissprotQ9SHE98e-79LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A314YWZ31e-118A0A314YWZ3_PRUYE; LOB domain-containing protein 4
STRINGXP_004293726.11e-128(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-76LOB domain-containing protein 4