PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20078.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 311aa    MW: 35722.4 Da    PI: 8.4403
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20078.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.65.1e-49241532128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                               pG+rFhPtdeelv +yL++kve+k+++l e ik +diyk++PwdLpk +   +ekewyfF++r kky+++ r+nr+tksg+Wkat
  mrna20078.1-v1.0-hybrid  24 LPGYRFHPTDEELVRFYLRRKVENKPIRL-ELIKLLDIYKYDPWDLPKaSGLVGEKEWYFFCRRGKKYRNSIRPNRVTKSGFWKAT 108
                              59***************************.89***************523344899****************************** PP

                      NAM  87 gkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128
                              g dk+v+s +ge    +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  mrna20078.1-v1.0-hybrid 109 GIDKPVYSVGGEFqtcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 153
                              ********95444456***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5319184IPR003441NAC domain
PROSITE profilePS5100552.59923184IPR003441NAC domain
PfamPF023653.6E-2625153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEVQKMMMMR DLSNNSTKDD ADYLPGYRFH PTDEELVRFY LRRKVENKPI RLELIKLLDI  60
YKYDPWDLPK ASGLVGEKEW YFFCRRGKKY RNSIRPNRVT KSGFWKATGI DKPVYSVGGE  120
FQTCIGLKKS LVYYRGSAGK GTKTDWMMHE FRLPATNPST GAHSNIKDIT EEAEVWTLCR  180
ILKRNNSSRK YETNWHKTTS KQSAADSSSK TCSTESEESF GASAAQKSDP LERSSTPRFN  240
NDHLCDGNNQ LSGGQLMTLK DEVVDPMVNS CINFWNPNEY EMLRPDNPNW DELSPMIDCV  300
LNPSPLYRSV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-462519019171NO APICAL MERISTEM PROTEIN
1ut4_B4e-462519019171NO APICAL MERISTEM PROTEIN
1ut7_A4e-462519019171NO APICAL MERISTEM PROTEIN
1ut7_B4e-462519019171NO APICAL MERISTEM PROTEIN
3swm_A4e-462519022174NAC domain-containing protein 19
3swm_B4e-462519022174NAC domain-containing protein 19
3swm_C4e-462519022174NAC domain-containing protein 19
3swm_D4e-462519022174NAC domain-containing protein 19
3swp_A4e-462519022174NAC domain-containing protein 19
3swp_B4e-462519022174NAC domain-containing protein 19
3swp_C4e-462519022174NAC domain-containing protein 19
3swp_D4e-462519022174NAC domain-containing protein 19
4dul_A4e-462519019171NAC domain-containing protein 19
4dul_B4e-462519019171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20078.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295475.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK555e-85NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2P6Q6Y50.0A0A2P6Q6Y5_ROSCH; Putative transcription factor NAM family
STRINGXP_004295475.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-84NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]