PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20015.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29520.3 Da    PI: 6.9058
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20015.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.52.6e-26959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             +rienk+ rqvtf+kRr+g+lKK +ELSvLCd+++ ++ifsstgk++ y+s
  mrna20015.1-v1.0-hybrid  9 SRIENKTTRQVTFAKRRAGLLKKTHELSVLCDVQIGLVIFSSTGKMFQYCS 59
                             59***********************************************96 PP
2K-box55.82e-1971170199
                    K-box   1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                              yq ssg++  ++++a  l+ e++k++ke++ L  ++ ++ GedL+   +++L++Le++Le+s++++R++K e+l +++++l+   k
  mrna20015.1-v1.0-hybrid  71 YQYSSGTRiPQHSDADILNAEIRKIRKETQDLHLSLQRYTGEDLSCVRFEDLEELENRLEESVNRVRARKFEILQQEVNNLRISTK 156
                              566777777788889999******************************************************************** PP

                    K-box  86 elqeenkaLrkkle 99 
                              + +e+n +L + ++
  mrna20015.1-v1.0-hybrid 157 QREEQNDELCHLIK 170
                              *******9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.632161IPR002100Transcription factor, MADS-box
SMARTSM004329.7E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-30281IPR002100Transcription factor, MADS-box
CDDcd002657.25E-40276No hitNo description
PRINTSPR004046.0E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-1781168IPR002487Transcription factor, K-box
PROSITE profilePS5129712.39585175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRGKINISR IENKTTRQVT FAKRRAGLLK KTHELSVLCD VQIGLVIFSS TGKMFQYCSD  60
STSMDDMIRR YQYSSGTRIP QHSDADILNA EIRKIRKETQ DLHLSLQRYT GEDLSCVRFE  120
DLEELENRLE ESVNRVRARK FEILQQEVNN LRISTKQREE QNDELCHLIK EHQAAVFTHQ  180
HHYQQQMGME PRSEEHRQLM EQFPFCGEEQ PLLQLATTSM QPQFAAYPAS SSSLPPNPPH  240
LHEFSLNTPI YGIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-21171169MEF2C
5f28_B4e-21171169MEF2C
5f28_C4e-21171169MEF2C
5f28_D4e-21171169MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20015.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293770.10.0PREDICTED: MADS-box protein FBP24 isoform X2
TrEMBLA0A2P6Q7871e-163A0A2P6Q787_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004293770.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.28e-50MIKC_MADS family protein