PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna19997.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 668aa MW: 74847.5 Da PI: 8.048 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 80.5 | 2.9e-25 | 96 | 204 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkv 68 +fY+eYAk++GF ++++s++s+ +g++++++f Cs++g++ e+++ ++ r +++ ++t+Cka+++v mrna19997.1-v1.0-hybrid 96 SFYKEYAKSMGFAAVIKASRRSRASGKFIDAKFACSRYGTKPETSQPetaepvshsressiclkrKRGGRASQSLEKTDCKACMHV 181 5***************************************999888899*************9877778889************** PP FAR1 69 kkekdgkwevtkleleHnHelap 91 k+++dg+w v +l +eHnH+++p mrna19997.1-v1.0-hybrid 182 KRRQDGRWTVCTLIKEHNHDIFP 204 *******************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.5E-23 | 96 | 204 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.137 | 377 | 413 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.1E-5 | 383 | 409 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.001 | 388 | 415 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MGIDLEQPSG EFHQADNGPG GNSHMVDGRE ENTSGDRVIV SVTNVPVNDR EIAGKNGSVS 60 NFKNRVDARD EINLNAPKNI ELHDGLEFES KEEAFSFYKE YAKSMGFAAV IKASRRSRAS 120 GKFIDAKFAC SRYGTKPETS QPETAEPVSH SRESSICLKR KRGGRASQSL EKTDCKACMH 180 VKRRQDGRWT VCTLIKEHNH DIFPDEAYYF RGHRKLDISS GNVGGNVGGN VDGLNAIRRR 240 TKNLFANMSR QSGGYKKSTN PKGGGKNQSP SVHHLSLEEG DAQRKTTLKE FLEQYNTILC 300 EKYEEEAKAD FETWHKQPAL KSPSPFGKQM ATLYTHVVFK KFQVEVLGVV ACHPKKEAED 360 GAIKTFRVQD FEEDHHFIVE WNELTSDISC LCHSFEFNGF LCRHVMIVLQ ISGVHNIPSQ 420 YILKRWTKDA KSRQTRGVGS SSFKSRVQLY NDLCRRAFEL GDEGSLSQES YNIAFVALEE 480 ALRNCENMNN SIQRVIHPVS PETHGSHSFE GVNQGNSTNK MNKKNSTSKK GQVHSEPEVL 540 TIEMQESWQG LEQLSSSATT LDGYIGPQQL VQGMGPLNTI SSRRENYYSN QHMQGLGQLN 600 SITHIQDAQY INQQRLHGVG QFHFRPQTIP NFVIADDPQD VDHSTVGRTQ IHGLASKHLQ 660 SKHPSCQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna19997.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004293778.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_011460505.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_011460506.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
TrEMBL | A0A2P6Q7C3 | 0.0 | A0A2P6Q7C3_ROSCH; Putative transcription factor FAR family | ||||
STRING | XP_004293778.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 1e-110 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna19997.1-v1.0-hybrid |