PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19997.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 668aa    MW: 74847.5 Da    PI: 8.048
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19997.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.52.9e-2596204191
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkv 68 
                              +fY+eYAk++GF  ++++s++s+ +g++++++f Cs++g++ e+++                   ++  r +++ ++t+Cka+++v
  mrna19997.1-v1.0-hybrid  96 SFYKEYAKSMGFAAVIKASRRSRASGKFIDAKFACSRYGTKPETSQPetaepvshsressiclkrKRGGRASQSLEKTDCKACMHV 181
                              5***************************************999888899*************9877778889************** PP

                     FAR1  69 kkekdgkwevtkleleHnHelap 91 
                              k+++dg+w v +l +eHnH+++p
  mrna19997.1-v1.0-hybrid 182 KRRQDGRWTVCTLIKEHNHDIFP 204
                              *******************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-2396204IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.137377413IPR007527Zinc finger, SWIM-type
PfamPF044343.1E-5383409IPR007527Zinc finger, SWIM-type
SMARTSM005750.001388415IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MGIDLEQPSG EFHQADNGPG GNSHMVDGRE ENTSGDRVIV SVTNVPVNDR EIAGKNGSVS  60
NFKNRVDARD EINLNAPKNI ELHDGLEFES KEEAFSFYKE YAKSMGFAAV IKASRRSRAS  120
GKFIDAKFAC SRYGTKPETS QPETAEPVSH SRESSICLKR KRGGRASQSL EKTDCKACMH  180
VKRRQDGRWT VCTLIKEHNH DIFPDEAYYF RGHRKLDISS GNVGGNVGGN VDGLNAIRRR  240
TKNLFANMSR QSGGYKKSTN PKGGGKNQSP SVHHLSLEEG DAQRKTTLKE FLEQYNTILC  300
EKYEEEAKAD FETWHKQPAL KSPSPFGKQM ATLYTHVVFK KFQVEVLGVV ACHPKKEAED  360
GAIKTFRVQD FEEDHHFIVE WNELTSDISC LCHSFEFNGF LCRHVMIVLQ ISGVHNIPSQ  420
YILKRWTKDA KSRQTRGVGS SSFKSRVQLY NDLCRRAFEL GDEGSLSQES YNIAFVALEE  480
ALRNCENMNN SIQRVIHPVS PETHGSHSFE GVNQGNSTNK MNKKNSTSKK GQVHSEPEVL  540
TIEMQESWQG LEQLSSSATT LDGYIGPQQL VQGMGPLNTI SSRRENYYSN QHMQGLGQLN  600
SITHIQDAQY INQQRLHGVG QFHFRPQTIP NFVIADDPQD VDHSTVGRTQ IHGLASKHLQ  660
SKHPSCQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19997.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293778.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
RefseqXP_011460505.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
RefseqXP_011460506.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
TrEMBLA0A2P6Q7C30.0A0A2P6Q7C3_ROSCH; Putative transcription factor FAR family
STRINGXP_004293778.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-110FAR1 family protein