PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna19934.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 35224.5 Da PI: 6.3139 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49 | 1.4e-15 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++ G g+W++I++ g+ R++k+c++rw +yl mrna19934.1-v1.0-hybrid 17 RGLWSPEEDEKLMNHIHHSGHGSWSSIPKIAGLERCGKSCRLRWINYL 64 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.9e-16 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ +++d+++ lG++ W+ Ia+ m+ gRt++++k++w++ mrna19934.1-v1.0-hybrid 70 RGSFSEQEERIIIDVHRVLGNR-WAQIAKQMP-GRTDNEVKNFWNS 113 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 9 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.73 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.35E-29 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.51E-9 | 20 | 64 | No hit | No description |
PROSITE profile | PS51294 | 25.737 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-25 | 68 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 70 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-10 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MSIDMVHNCC SKQKVKRGLW SPEEDEKLMN HIHHSGHGSW SSIPKIAGLE RCGKSCRLRW 60 INYLRPDLKR GSFSEQEERI IIDVHRVLGN RWAQIAKQMP GRTDNEVKNF WNSCIKKKLI 120 SQGLDPNTHN RIIPAASDNS KSNHDSSSLD ESSSSTLPTT YLFPNPNMAW TDLFQDQYPR 180 GSLPSVENSE IPIIPSFSHH YYPSELDIII ENCKKWGTGG SSGSDTTAEH TKMECLSMKP 240 EPVDESCEVQ TEKDSCNTVL NYNGRQTSMD ASSFGSCNLL DFDFVESTLV PCEMDYHLRP 300 IMDQVAWHRN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 17 | 119 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna19934.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004293863.1 | 0.0 | PREDICTED: transcription factor MYB46-like | ||||
TrEMBL | A0A2P6Q7M6 | 1e-168 | A0A2P6Q7M6_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004293863.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3466 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 5e-68 | myb domain protein 67 |
Link Out ? help Back to Top | |
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Phytozome | mrna19934.1-v1.0-hybrid |