PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19898.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 364aa    MW: 41458.4 Da    PI: 7.4986
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19898.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.75.4e-54111411129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyW 83 
                              +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL++  ++ +  ++ewyfFs++dkky+tg+r+nrat++g+W
  mrna19898.1-v1.0-hybrid  11 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKEkcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFW 95 
                              69****************************.9***************952444443456*************************** PP

                      NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                              katg+dk+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrle
  mrna19898.1-v1.0-hybrid  96 KATGRDKAIHLSDSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLE 141
                              ********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-592165IPR003441NAC domain
PROSITE profilePS5100558.19811165IPR003441NAC domain
PfamPF023655.3E-2812140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MMSAGNGQLT VPPGFRFHPT DEELLYYYLR KKVSYEAIDL DVIREVDLNK LEPWDLKEKC  60
RIGSGPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIHLSDSK RIGMRKTLVF  120
YTGRAPHGQK TDWIMHEYRL EDHHDNVNVH DVQEDGWVVC RVFKKKNHIN RGFQPEFGHH  180
QEVEHDLITH MKASGSHGQV ILDHHHHQLK QNHQHHLETS LYDYPNTFDG SMHLPQLFSP  240
ESAAAAAAAN NSSSFLSAPN TNMPALNPLD LECSQNLLKL TSTTAGSCGL NMQQQQQQQE  300
MRSFNGDWSF LDKLLQSHHP QPQDHHHVAA AAATTSTTQR LFPFQYLGCS GSTTHVDILK  360
FSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-51817114171NO APICAL MERISTEM PROTEIN
1ut4_B4e-51817114171NO APICAL MERISTEM PROTEIN
1ut7_A4e-51817114171NO APICAL MERISTEM PROTEIN
1ut7_B4e-51817114171NO APICAL MERISTEM PROTEIN
3swm_A4e-51817117174NAC domain-containing protein 19
3swm_B4e-51817117174NAC domain-containing protein 19
3swm_C4e-51817117174NAC domain-containing protein 19
3swm_D4e-51817117174NAC domain-containing protein 19
3swp_A4e-51817117174NAC domain-containing protein 19
3swp_B4e-51817117174NAC domain-containing protein 19
3swp_C4e-51817117174NAC domain-containing protein 19
3swp_D4e-51817117174NAC domain-containing protein 19
4dul_A4e-51817114171NAC domain-containing protein 19
4dul_B4e-51817114171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19898.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460557.10.0PREDICTED: NAC domain-containing protein 76
SwissprotQ9MA171e-120SMB_ARATH; Protein SOMBRERO
TrEMBLA0A2P6Q7T10.0A0A2P6Q7T1_ROSCH; Putative transcription factor NAM family
STRINGXP_004295539.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72043447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-102NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]