PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19889.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 746aa    MW: 82605.2 Da    PI: 6.2021
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19889.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.5e-10162186327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               + C++f++t  Ck+G +CkF+H++
  mrna19889.1-v1.0-hybrid 162 APDCPYFLKTQRCKFGLKCKFNHPK 186
                              589********************96 PP
2zf-CCCH38.91.4e-12209233327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              +++C f+++tG+CkyG++CkF+H++
  mrna19889.1-v1.0-hybrid 209 EPPCAFYLKTGQCKYGATCKFNHPK 233
                              79*********************96 PP
3zf-CCCH37.34.6e-12267290326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              ++ C+f+++tG CkyG++C+++H+
  mrna19889.1-v1.0-hybrid 267 EADCPFYLKTGSCKYGATCRYNHP 290
                              789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.105.6E-255596IPR032675Leucine-rich repeat domain, L domain-like
PfamPF082637.3E-115895IPR013210Leucine-rich repeat-containing N-terminal, plant-type
PROSITE profilePS5010314.633159187IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5159186IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-8162186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-5164189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4165187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.023206234IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6206233IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10209233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5210234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-6211232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971264292IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5264291IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9267290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-5269290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4270289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.80.10.105.6E-25301439IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520586.6E-54333654IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514505.417357379IPR001611Leucine-rich repeat
PfamPF135161.5382396IPR001611Leucine-rich repeat
PROSITE profilePS514505.841383405IPR001611Leucine-rich repeat
PfamPF138554.7E-7430487IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.101.0E-53440656IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003690.94450474IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514507.258452474IPR001611Leucine-rich repeat
SMARTSM0036963523546IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.48524546IPR001611Leucine-rich repeat
PfamPF005600.78525547IPR001611Leucine-rich repeat
PROSITE profilePS514504.662549570IPR001611Leucine-rich repeat
PfamPF138552.2E-6586625IPR001611Leucine-rich repeat
SMARTSM00369140588611IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.95590612IPR001611Leucine-rich repeat
PRINTSPR000195.0E-6591604No hitNo description
SMARTSM0036937612635IPR003591Leucine-rich repeat, typical subtype
PRINTSPR000195.0E-6612625No hitNo description
PROSITE profilePS514507.666614636IPR001611Leucine-rich repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MDSFCAKIFK PTSSGFLINN VARYLLFLLL ASSYMHGTSQ VCLGDELPSG VRSSSCIEEE  60
GRALLSFKAD VYDPSSRLSS WVGLDCCRWK GISCSNRTGH VAKMDLPNPN YDQENGFKRS  120
SEGCLLIAEY DLERPASLTI LFGFLRVPLA APSESLPERP GAPDCPYFLK TQRCKFGLKC  180
KFNHPKDKLA TAGASENGDV NALPERPSEP PCAFYLKTGQ CKYGATCKFN HPKDIQIPST  240
TQENKSAETE TALKTESSEV AVKPLGEADC PFYLKTGSCK YGATCRYNHP DRYGILTEVH  300
FRTLTKLETF GISTQQPFSL SLNVAHDWVP PFQLDSLDIV NCRVGPAFGM WLRSQTELTH  360
LRLRNTGISD SIPEEWFLTI SSKLTCVDLS NNQIRGKLPF HMNSPSLYYI DLNHNEFEGP  420
LPQWSSPASY LDLRSNSFSG PIPSNYDQLL PNLEELSLSD NNLSGSIPPS LCNMSSLRFL  480
ILRSNHLSGD FSRAWSTWPY IQAVDVSYND LTGNITSSMG VPSSLWVLNL SNNNFTGQIP  540
SSLFQNCTEL VSIDLAGNKF TGGIPLPLQT RSPLNHLTGN IPLKIGNLRW LETLDLSHNH  600
LSGHIPHSVS SLTSLSHLDL SHNNLSGRIP SGNQLQTLND SSIYESNPSL CGVPLSTLCP  660
GDAALAPADS DDDDHNDDDD DDDENRKFGM YVSGALGFII GFWSVCGTLV MKKSWRYAYF  720
RFFDKIQERA ELVIAVRVAR WQRKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mn8_A1e-3133465253760LRR receptor-like serine/threonine-protein kinase FLS2
4mna_A6e-3233465247640LRR receptor-like serine/threonine-protein kinase FLS2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19889.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462017.10.0PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180
TrEMBLA0A2P6Q7T31e-164A0A2P6Q7T3_ROSCH; Putative non-specific serine/threonine protein kinase
STRINGEMJ143961e-149(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-50floral homeotic protein (HUA1)