PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna19887.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C3H | ||||||||
Protein Properties | Length: 901aa MW: 98792.8 Da PI: 6.2596 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.3 | 8.3e-11 | 144 | 168 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+G+ CkF H+ mrna19887.1-v1.0-hybrid 144 GEKDCAHYMQTRTCKFGEACKFDHP 168 7889********************8 PP | |||||||
2 | zf-CCCH | 32.5 | 1.5e-10 | 197 | 221 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C++f++t Ck+G rCkF+H++ mrna19887.1-v1.0-hybrid 197 APDCPYFLKTQRCKFGLRCKFNHPK 221 589********************96 PP | |||||||
3 | zf-CCCH | 38.6 | 1.8e-12 | 244 | 268 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+CkyG++CkF+H++ mrna19887.1-v1.0-hybrid 244 EPPCAFYLKTGQCKYGATCKFNHPK 268 79*********************96 PP | |||||||
4 | zf-CCCH | 37.1 | 5.3e-12 | 318 | 343 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ mrna19887.1-v1.0-hybrid 318 PGEADCPFYLKTGSCKYGATCRYNHP 343 57899********************9 PP | |||||||
5 | zf-CCCH | 38.7 | 1.7e-12 | 399 | 423 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++++tG CkyG++C+F+H+ mrna19887.1-v1.0-hybrid 399 GQTECEYYMKTGVCKYGAQCRFHHP 423 6789********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0062 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.197 | 142 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-5 | 143 | 169 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-8 | 144 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 194 | 221 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.605 | 194 | 222 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-8 | 197 | 221 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-5 | 199 | 224 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 200 | 222 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-6 | 241 | 268 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.023 | 241 | 269 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-10 | 244 | 268 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 245 | 269 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 246 | 267 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-7 | 317 | 344 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.432 | 317 | 345 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 319 | 343 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.46E-5 | 321 | 344 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 323 | 342 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.03E-6 | 395 | 425 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 397 | 424 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.765 | 397 | 425 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-10 | 399 | 423 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 403 | 423 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 901 aa Download sequence Send to blast |
MASHLFTYGG AAAQSAPPPA PPLSTVYTPR SLAQSYLSDP VAQRYLSGSD PLSTSSMYFS 60 ASDGLGAYSD AARATSYMMS SWPAPDAEPA PPGFKRSSEA LYHQALLGAH DPIGQMEAWY 120 STNPLAKRPR FENTSLPIYP QRPGEKDCAH YMQTRTCKFG EACKFDHPIW VPEGGIPDWK 180 EVPLAAPSES LPERPGAPDC PYFLKTQRCK FGLRCKFNHP KDKLATAGAS ENGDVNALPE 240 RPSEPPCAFY LKTGQCKYGA TCKFNHPKDI QIPSTTQENK SAETETALKT ESSEVAVKPL 300 VSFTPALLYN SKELPVRPGE ADCPFYLKTG SCKYGATCRY NHPDRYDINP PVAAISYPLP 360 APSVAGFNLG VANPSAFTYQ TLGQTTMGVN PTVYPQRFGQ TECEYYMKTG VCKYGAQCRF 420 HHPIDRPAVP LSTTKPSQQE NVKLTLAGLP RREQWQHHKQ NLILLEGKHK QLNPHHSSSR 480 LQNEEEMRPR KETSAATPAH NAATEILEFY FSSHTMSLDP SHSSIRPYNS PTSPVAPQVS 540 STTSPSSPSA PRTIPQCLYN LTALAFGNDT DPGVTRSFIS DFLEATTLTL KGQELVYNKT 600 LPLVNTIDFS SNHLDGEIPK GNQLQTLNDS SIYESNPSLC GVPLSTLCLG DAAPAPADPN 660 DDDGHNDDDN EDNGKLGFWS VCGTLVMKKS WRYAYFRFFD NIQERVESAI AVRGYIVSFS 720 FGSGAFHVTA LWCWGFVEEY GRYCSWMLHL NFGRTTEAEL VLGSEKCMQT RVEEIDKLLQ 780 SAVATMKPPP PRRRFSVILD CISDDDAAST SRASSTEAEI FCALVDLSDL SPDLVVDLHG 840 GKSTVDGEDV ILGFQFSVFR SGLPEAKDNC SRTNTTPAET GEDVGGYRGR GCYRGRYGFL 900 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna19887.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004295542.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A2P6Q7Y6 | 0.0 | A0A2P6Q7Y6_ROSCH; Putative transcription factor C3H family | ||||
STRING | XP_004295542.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7558 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-161 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | mrna19887.1-v1.0-hybrid |