PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna19866.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | G2-like | ||||||||
Protein Properties | Length: 288aa MW: 31812.5 Da PI: 7.8485 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.2 | 7.7e-33 | 31 | 85 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl mrna19866.1-v1.0-hybrid 31 KPRLRWTADLHDRFVDAVTQLGGAAKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 85 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-31 | 28 | 86 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.7E-24 | 31 | 86 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 2.87E-16 | 31 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.9E-7 | 33 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.9E-15 | 119 | 164 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MFPRLVQPPP LEGIEDMHRA DPCLVLTSDP KPRLRWTADL HDRFVDAVTQ LGGAAKATPK 60 AIMRTMNVKG LTLFHLKSHL QKYRLGKQSG KDMDEVSKDD CHFALKCLVL PNINFRGYEV 120 KEALRVQMEV QSKLHVQVEA EKHLQIRQDA ERRYMAMLER ACKMLADQFI GGSVIDTDGH 180 KCQVLGNKNP KSSSLDPLGF YSLQSTDVAG VHGQEEVLTS FQPQRADCST ESCLTSHESP 240 GGLTLEGSPG GGKTRMLSLE SATASLIWGE AKVRTQVEAH GMTRYAI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-18 | 31 | 87 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-18 | 31 | 87 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-18 | 31 | 87 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-18 | 31 | 87 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna19866.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT893405 | 1e-168 | KT893405.1 Prunus persica cultivar Jinliuzaohong Myb family transcription factor APL (APL) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011460083.1 | 0.0 | PREDICTED: myb family transcription factor APL-like | ||||
TrEMBL | A0A2P6Q1U6 | 1e-173 | A0A2P6Q1U6_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004293427.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6618 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 1e-55 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna19866.1-v1.0-hybrid |