PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19838.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 473aa    MW: 52258.6 Da    PI: 6.573
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19838.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.11e-22280366186
                 trihelix   1 rWtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                              rW + e +aLi +  ++e+++r+  ++  ++lWee++  m + gf r+ k+Ckekwen+nk++kk  ++++kr++++ +tc+yf++
  mrna19838.1-v1.0-hybrid 280 RWIQAEAQALIGLWASVEHKFRTpsNSGPGALWEEIALGMNSMGFDRTGKKCKEKWENMNKYFKKAITNDRKRSAND-KTCQYFNE 364
                              8*********************854668899*****************************************96555.6******* PP

                 trihelix  85 le 86 
                              le
  mrna19838.1-v1.0-hybrid 365 LE 366
                              97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.725273339IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-4278339IPR009057Homeodomain-like
CDDcd122031.14E-20279345No hitNo description
PfamPF138372.1E-18279366No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEVLTGDRNM PDPAAAEGEE FPAHITPLFT EPHQQLVFDN PTAAAMSPQK LRIRCNGRSA  60
LPDDADLALL DKGLSPRNDV DEAHGVQFVN WKRKRKRTSS CASSTRKSRR LEKLEHFLES  120
LVNKMLEKQE QMHMKLIEMV QDKEKERIAK EEAWKQQELE RIIRDEEVRA QETSRSLAIV  180
NFIQNLLGSD VQLPQPAPIV AQPVAAVPSS SHHDHQCVEE NDKLHKDCHV QVPQPAPLVA  240
QSVATVPPTS NDDHQCAEQN DNLHKDTATV KCSATATDKR WIQAEAQALI GLWASVEHKF  300
RTPSNSGPGA LWEEIALGMN SMGFDRTGKK CKEKWENMNK YFKKAITNDR KRSANDKTCQ  360
YFNELELLYK SGLLNLGNVG FSPPSNLENG GFSPTSNLGN GSCSPTSNMG NGSLSPTSNM  420
GNGGFSPTNN QKSGNESQQC VPSDTSLLTR ATIPFQIDEA SERTRVVVSP AL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19838.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293402.10.0PREDICTED: trihelix transcription factor GTL1
TrEMBLA0A2P6Q2071e-177A0A2P6Q207_ROSCH; Putative transcription factor MYB family
STRINGXP_004293402.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.12e-41Trihelix family protein