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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
mrna19801.1-v1.0-hybrid |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family |
GRAS |
Protein Properties |
Length: 535aa MW: 59906.8 Da PI: 5.7569 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
mrna19801.1-v1.0-hybrid | genome | GDR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 413 | 2.7e-126 | 160 | 531 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86
l+++L++cA+a+s++d+ a ++++ l +++s +g+pmqRl ay++e+L+arl +s+s +yk+l+++ + s+e +++++++++
mrna19801.1-v1.0-hybrid 160 LKNVLIHCAHAISEEDMYTAANCMEVLGHMVSVSGEPMQRLGAYMLEGLKARLEKSGSMIYKTLKCEVPT---SEELMTYMSILYQ 242
5789****************************************************************99...8999999999*** PP
GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
++P+ kf++l N I +a+ +e+rvHiiDf+i qG QW++L+q La++p+gpp +RiTgv++ +s+ + l+ +g+rL+++A+
mrna19801.1-v1.0-hybrid 243 ICPYWKFAYLSSNVIIRQALLNESRVHIIDFQIAQGSQWIPLIQDLACQPGGPPLIRITGVDDTQSNhaRGGGLHIVGKRLSEVAA 328
***************************************************************9988889999************* PP
GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
+ +vpf+fn+ +a + +++le+Lr++pgEa+aV + + lh+++desvs+e++rd++L+lv+slsPkv+++veqe+++n++sF r
mrna19801.1-v1.0-hybrid 329 KYNVPFQFNA-AAMSGCEVDLENLRIQPGEAIAVTFPYVLHHMPDESVSTENHRDRLLRLVRSLSPKVMTLVEQESNTNTSSFYSR 413
**********.89999********************************************************************** PP
GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
f+e+++yy+a+f+s++a+ +r++ +ri+ E ++++r+ivn++ace aer+erhe l+kWr+rl++ GF+p p++ +++ ll+
mrna19801.1-v1.0-hybrid 414 FVESVDYYTAMFESIDAGCARDNTQRINAEMHCVARDIVNMIACEDAERVERHELLGKWRSRLMMDGFTPCPFGPAGIGEIRNLLK 499
************************************************************************************** PP
GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+++ yrvee +g+l+lgWk+r+Lv+ SaWr
mrna19801.1-v1.0-hybrid 500 DNYDENYRVEEVNGALYLGWKKRALVTSSAWR 531
***999*************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 535 aa
Download sequence Send
to blast |
MLHHQPMKKI DPYSSPHFQI LENSVCPDTG SQGKNVSFQT DKEEFFTLES TPVNDGFIAC 60 DSPSAISGLS NRSPFSPQGS HSYSSDHHHH HFSDTTSGSP VSGCSGVDDG NDLKYKLREL 120 EVSLLGPESD IVDSHYCCYK SDMPRWSEKE IAEMIPKLNL KNVLIHCAHA ISEEDMYTAA 180 NCMEVLGHMV SVSGEPMQRL GAYMLEGLKA RLEKSGSMIY KTLKCEVPTS EELMTYMSIL 240 YQICPYWKFA YLSSNVIIRQ ALLNESRVHI IDFQIAQGSQ WIPLIQDLAC QPGGPPLIRI 300 TGVDDTQSNH ARGGGLHIVG KRLSEVAAKY NVPFQFNAAA MSGCEVDLEN LRIQPGEAIA 360 VTFPYVLHHM PDESVSTENH RDRLLRLVRS LSPKVMTLVE QESNTNTSSF YSRFVESVDY 420 YTAMFESIDA GCARDNTQRI NAEMHCVARD IVNMIACEDA ERVERHELLG KWRSRLMMDG 480 FTPCPFGPAG IGEIRNLLKD NYDENYRVEE VNGALYLGWK KRALVTSSAW RCAY*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |