PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19801.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 535aa    MW: 59906.8 Da    PI: 5.7569
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19801.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4132.7e-1261605311374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l+++L++cA+a+s++d+  a ++++ l +++s +g+pmqRl ay++e+L+arl +s+s +yk+l+++  +   s+e +++++++++
  mrna19801.1-v1.0-hybrid 160 LKNVLIHCAHAISEEDMYTAANCMEVLGHMVSVSGEPMQRLGAYMLEGLKARLEKSGSMIYKTLKCEVPT---SEELMTYMSILYQ 242
                              5789****************************************************************99...8999999999*** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P+ kf++l  N  I +a+ +e+rvHiiDf+i qG QW++L+q La++p+gpp +RiTgv++ +s+  +   l+ +g+rL+++A+
  mrna19801.1-v1.0-hybrid 243 ICPYWKFAYLSSNVIIRQALLNESRVHIIDFQIAQGSQWIPLIQDLACQPGGPPLIRITGVDDTQSNhaRGGGLHIVGKRLSEVAA 328
                              ***************************************************************9988889999************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              + +vpf+fn+ +a +  +++le+Lr++pgEa+aV + + lh+++desvs+e++rd++L+lv+slsPkv+++veqe+++n++sF  r
  mrna19801.1-v1.0-hybrid 329 KYNVPFQFNA-AAMSGCEVDLENLRIQPGEAIAVTFPYVLHHMPDESVSTENHRDRLLRLVRSLSPKVMTLVEQESNTNTSSFYSR 413
                              **********.89999********************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f+e+++yy+a+f+s++a+ +r++ +ri+ E ++++r+ivn++ace aer+erhe l+kWr+rl++ GF+p p++     +++ ll+
  mrna19801.1-v1.0-hybrid 414 FVESVDYYTAMFESIDAGCARDNTQRINAEMHCVARDIVNMIACEDAERVERHELLGKWRSRLMMDGFTPCPFGPAGIGEIRNLLK 499
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +++ yrvee +g+l+lgWk+r+Lv+ SaWr
  mrna19801.1-v1.0-hybrid 500 DNYDENYRVEEVNGALYLGWKKRALVTSSAWR 531
                              ***999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.518134511IPR005202Transcription factor GRAS
PfamPF035149.3E-124160531IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MLHHQPMKKI DPYSSPHFQI LENSVCPDTG SQGKNVSFQT DKEEFFTLES TPVNDGFIAC  60
DSPSAISGLS NRSPFSPQGS HSYSSDHHHH HFSDTTSGSP VSGCSGVDDG NDLKYKLREL  120
EVSLLGPESD IVDSHYCCYK SDMPRWSEKE IAEMIPKLNL KNVLIHCAHA ISEEDMYTAA  180
NCMEVLGHMV SVSGEPMQRL GAYMLEGLKA RLEKSGSMIY KTLKCEVPTS EELMTYMSIL  240
YQICPYWKFA YLSSNVIIRQ ALLNESRVHI IDFQIAQGSQ WIPLIQDLAC QPGGPPLIRI  300
TGVDDTQSNH ARGGGLHIVG KRLSEVAAKY NVPFQFNAAA MSGCEVDLEN LRIQPGEAIA  360
VTFPYVLHHM PDESVSTENH RDRLLRLVRS LSPKVMTLVE QESNTNTSSF YSRFVESVDY  420
YTAMFESIDA GCARDNTQRI NAEMHCVARD IVNMIACEDA ERVERHELLG KWRSRLMMDG  480
FTPCPFGPAG IGEIRNLLKD NYDENYRVEE VNGALYLGWK KRALVTSSAW RCAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-531645318375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19801.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293381.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_011460052.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2P6Q2190.0A0A2P6Q219_ROSCH; Putative transcription factor GRAS family
STRINGXP_004293381.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13