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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | mrna19716.1-v1.0-hybrid | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family | NAC | ||||||||
| Protein Properties | Length: 348aa MW: 39479.1 Da PI: 4.9307 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 181.2 | 2.5e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84
lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat++gyWk
mrna19716.1-v1.0-hybrid 6 LPPGFRFHPTDEELVAYYLDRKINGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWK 90
79****************************.99**************96435566888**************************** PP
NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
atgkd++v s ++++vg+kktLv+ykgrap+g +t+Wvmheyrl
mrna19716.1-v1.0-hybrid 91 ATGKDRAVNS-NRRAVGMKKTLVYYKGRAPHGIRTNWVMHEYRL 133
*********9.9999***************************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 2.22E-64 | 3 | 157 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 60.971 | 6 | 157 | IPR003441 | NAC domain |
| Pfam | PF02365 | 5.6E-29 | 7 | 133 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 348 aa Download sequence Send to blast |
MAPMTLPPGF RFHPTDEELV AYYLDRKING RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVNS NRRAVGMKKT LVYYKGRAPH 120 GIRTNWVMHE YRLTDSVCGS PSSSLKDSYA LCRIFKKTIQ IPKNNKEEKT IGNTLLNRNI 180 LGKDNSTGIN KGEASRGIEA DQDYENYSNP DYPKFLSDTS SSDLTQGTPT ETGIADDLQA 240 PFASDEANSS ANLYSLGAHG SSDNLFQDTY MPNDTSFQNY QFPYPPLELE DFPMINLAVE 300 MNTLKPQIMD DYISCDKLKD YMNGTLEEIF SLCSSQENNH VALPMQD* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ut4_A | 1e-57 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-57 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-57 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-57 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 1e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 1e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 1e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 1e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 1e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 1e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 1e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 1e-57 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-57 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00205 | DAP | Transfer from AT1G54330 | Download |
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| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | mrna19716.1-v1.0-hybrid |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004293835.1 | 0.0 | PREDICTED: NAC domain-containing protein 86 | ||||
| TrEMBL | A0A2P6Q807 | 0.0 | A0A2P6Q807_ROSCH; Putative transcription factor NAM family | ||||
| STRING | XP_004293835.1 | 0.0 | (Fragaria vesca) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF10508 | 33 | 41 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G54330.1 | 1e-110 | NAC domain containing protein 20 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | mrna19716.1-v1.0-hybrid |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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