PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna19715.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 341aa MW: 38045.6 Da PI: 6.9159 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1.1e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l++ v+ +G g+W+++++ g+ R++k+c++rw +yl mrna19715.1-v1.0-hybrid 13 RGLWSPEEDDKLIKHVTTHGHGSWSSVPKNAGLERCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.7e-17 | 66 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE+++++d+++ lG+ +W+ Ia++++ gRt++++k++w++ mrna19715.1-v1.0-hybrid 66 RGSFTSEEEQIIIDVHRILGNSRWAQIAKHLP-GRTDNEVKNFWNS 110 89******************************.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.118 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.6E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.10E-11 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 24.95 | 61 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-25 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-15 | 65 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 66 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.48E-13 | 68 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MGHRCCGKHK VKRGLWSPEE DDKLIKHVTT HGHGSWSSVP KNAGLERCGK SCRLRWINYL 60 RPELKRGSFT SEEEQIIIDV HRILGNSRWA QIAKHLPGRT DNEVKNFWNS CIKKKLMSQG 120 LDPQTHNLIS SHKRSVASNK TAGSNAKTQS HIDQERPVFT VNNMSQKTDS STEMNYSMST 180 PIVPLLNAQP PTVQSMMASP TNNNHYLVQN PNSGWNNVSD IPTFPDSTLN MSSASSSSMF 240 GHMDDSNCIW AAGAEAYVPA PGAMEVQGEQ SKGQVVQVHQ EKEKLLEMEM EAMQDMEIAA 300 SFDQCSSFDY SLVEYYSTMM SGVAPHDHVN YSAADFTWNF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 13 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna19715.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004293853.1 | 0.0 | PREDICTED: myb-related protein 330-like | ||||
TrEMBL | A0A2P6Q805 | 0.0 | A0A2P6Q805_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004293853.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3466 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 4e-88 | myb domain protein 67 |
Link Out ? help Back to Top | |
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Phytozome | mrna19715.1-v1.0-hybrid |