PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19676.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 377aa    MW: 42390.4 Da    PI: 6.8525
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19676.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-05139161123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C+ C+k+F++   L  H+++H
  mrna19676.1-v1.0-hybrid 139 FICKLCDKTFTSYQALGGHMSSH 161
                              89*******************99 PP
2zf-C2H210.80.0015195216122
                              EEETTTTEEESSHHHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                              y+C++C+++Fs+   L  H ++
  mrna19676.1-v1.0-hybrid 195 YRCSNCDRTFSSFQALGGHRSS 216
                              9**********99988888766 PP
3zf-C2H215.16.8e-05307329123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ C+k+F++   L  H+r+H
  mrna19676.1-v1.0-hybrid 307 HQCKVCSKTFPTGRALGGHQRLH 329
                              79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.5E-11139161IPR007087Zinc finger, C2H2
SMARTSM003550.0035139161IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.24E-5139161No hitNo description
PROSITE profilePS5015710.45139166IPR007087Zinc finger, C2H2
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
SuperFamilySSF576671.24E-5190214No hitNo description
PfamPF139122.4E-8194216IPR007087Zinc finger, C2H2
SMARTSM0035550195215IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-7245270IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-8245268No hitNo description
SMARTSM003550.093246268IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221246273IPR007087Zinc finger, C2H2
PROSITE patternPS000280248268IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-8302329No hitNo description
Gene3DG3DSA:3.30.160.603.2E-4306329IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.2E-9307331IPR007087Zinc finger, C2H2
SMARTSM003550.021307329IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993307329IPR007087Zinc finger, C2H2
PROSITE patternPS000280309329IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MINQPEALVA QFSYTYDEQQ SNAAGTSRIG CYSDYLANSL PRSRSISSYD SEKTYTDPML  60
YSSKAVEELS GLMMLADVCE EEQQDSNSIN SYQHVDGNVI KDVAGTFKRR KLLLDEADKR  120
WSTGDRYGYN NKDDIDCEFI CKLCDKTFTS YQALGGHMSS HNRLKINFAD HDHDRFSSQY  180
NNEQRPHPHP VVNVYRCSNC DRTFSSFQAL GGHRSSQCKD VNNNNNNTNN SADNNDPAEP  240
RQDEVHRCHV CKKAFTSYRA LGGHVSSHSK NKNNNNVDQD QSNSADMSTS RAEDKNERQK  300
LYQTVPHQCK VCSKTFPTGR ALGGHQRLHY KGPTQALGKS SQQSSAHKHL GINLNEIPSM  360
EDEDGTYEPS VILKLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19676.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459646.10.0PREDICTED: zinc finger protein ZAT3-like
TrEMBLA0A2P6PNL61e-117A0A2P6PNL6_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004292041.11e-141(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-13C2H2 family protein