PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna19641.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 300aa MW: 33541 Da PI: 9.3282

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna19641.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99	3.3e-31	67	120	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrW+++LH++Fv+ave+LGG+++AtPk il++m+vkgLt++hvkSHLQ+ R+ mrna19641.1-v1.0-hybrid 67 PRLRWSSDLHRCFVHAVERLGGEDRATPKLILQIMNVKGLTISHVKSHLQMCRS 120 8**************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.958	63	123	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-30	63	122	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.72E-14	65	120	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.8E-24	67	120	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-7	68	117	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MKRVEIVDRL SSLMSFSSSS LDNGEVVYSP SYSSFGDQAD QASLPAQQMS LMKPSATVRP 60 YLRSKMPRLR WSSDLHRCFV HAVERLGGED RATPKLILQI MNVKGLTISH VKSHLQMCRS 120 MKHEKRIQEA AIAAKRNDKA KLPDTSNSYL LHPTKSIATL PCCQRSNWMM RNMYNSAPYH 180 SNRSFYCIEG IDHNNTSTVA KWNNENCKQN SYFIFTDLVK RGSDNAQESN DQVKALSLVN 240 AGCHSTHNKL EDLATGAHID AAMSPSLKSS PKAYYSQQFR LRDAANSVVD DVSLELSLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna19641.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004295277.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600
TrEMBL	A0A2P6Q2J4	1e-156	A0A2P6Q2J4_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004295277.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-31	G2-like family protein

Link Out ? help Back to Top
Phytozome	mrna19641.1-v1.0-hybrid