PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19384.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRF
Protein Properties Length: 445aa    MW: 48302.1 Da    PI: 9.4384
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19384.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.74.1e-23117161145
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                              d+epgrCrRtDGKkWRC+r+v++ +k+C++H+hrgr+rsrk++e+
  mrna19384.1-v1.0-hybrid 117 DPEPGRCRRTDGKKWRCRRDVVPYEKYCQKHIHRGRQRSRKPVEA 161
                              79****************************************997 PP
2WRC69.34.8e-22333373242
                      WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                               epgrCrRtDGKkWRC+++vl+++k+C+rH+hrg ++ r+s
  mrna19384.1-v1.0-hybrid 333 LEPGRCRRTDGKKWRCKSNVLPNQKYCDRHIHRGVKQMRTS 373
                              59********************************9998887 PP
3QLQ45.62.1e-165085237
                      QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                              FTaaQl++L++Q  +y+y+aa++P P +L+++i+k
  mrna19384.1-v1.0-hybrid 50 EFTAAQLNELEQQRVIYQYIAAGLPAPFQLVLPIWK 85
                             5*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.1E-84985IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.035085IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-95184IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.568117161IPR014977WRC domain
PfamPF088796.4E-19118160IPR014977WRC domain
PROSITE profilePS5166721.565332378IPR014977WRC domain
PfamPF088794.3E-18334373IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEGTQIVKVK HEFIEVCSDD EEESSSSAPS IKLGLAVGGG EVGKRRRSSE FTAAQLNELE  60
QQRVIYQYIA AGLPAPFQLV LPIWKSVAGA SFSNAAVYQQ YPSFVRYGGF DYRNKMDPEP  120
GRCRRTDGKK WRCRRDVVPY EKYCQKHIHR GRQRSRKPVE ASEVTPPPST TLLKNSGGEL  180
LNSKKNIQIQ TQKGLLLMAQ PSNSVSVCHS PTTSSGYHEL AKNSSTVAYT TSTPSYITAT  240
TPAAAAPSTT AGQMPVTTSA SVDNNILIGA KDNGYSYHAN NYGIIRGSRN TINVGSNIAP  300
GLGFSPKSVL QAGHMTLVSC NGLYFDNGSG EELEPGRCRR TDGKKWRCKS NVLPNQKYCD  360
RHIHRGVKQM RTSSPVATAS TSASAMNSTR PSQITGIAEE IPSTNLTMSI PARSPLVQND  420
EKSNSSSDSD ATITDTSLSA YEQLS
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19384.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306901.10.0PREDICTED: growth-regulating factor 9
TrEMBLA0A2P6SG610.0A0A2P6SG61_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family
STRINGXP_004306901.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.14e-31growth-regulating factor 4