PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19382.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 619aa    MW: 69967.2 Da    PI: 4.338
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19382.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.35.7e-14321565127
                      NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp.k....kvkaeekewyfFskrdkkya..tgkrknratksgy 82 
                              + F+Ptd++l+ ++L + ++    ++  +i+++d++ + ePw +  k    + + + +e+yfF+++ kk +   g+r nr++  g 
  mrna19382.1-v1.0-hybrid  32 ITFNPTDSQLM-QFLLQDLAP---DF--IITDCDLFGHeEPWAIWdKylgfRNQFNPDELYFFMPALKKLSpnGGSRINRTIGGGS 111
                              47*********.666555543...33..699***998868****6444544333355599*****99987753589********** PP

                      NAM  83 Wkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                              W ++   k v++   +g+++g+k+ L + +  + + ++++W+++ey+
  mrna19382.1-v1.0-hybrid 112 WTQKEPFKIVCADedEGRAIGVKRKLKYLN--QGSDQNAQWCLDEYT 156
                              **99887777776778888*********94..444468********7 PP
2NAM30.61e-091933282127
                      NAM   2 ppGfr..FhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvka..eek.ewyfFskrdkkya...tgkrknrat 78 
                              p G+r  F+Pt+++l+ +++  +++ +      ++ ++d++   ePw++ ++++a  ++   +yf++++ k+ +   +g +  r +
  mrna19382.1-v1.0-hybrid 193 PLGMRifFRPTESQLIRYFIGLNIAPDF-----IVYDCDLFGQeEPWEIWERYSAafNKPdLLYFYASSMKRLSskgRGCNFDRRV 273
                              66776669********888877666444.....477899886549****7543332233325599999888776322455778889 PP

                      NAM  79 ksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyr 127
                               sg+W+++   k v++         k + +g k+ L + +  + + ++ +W ++e++
  mrna19382.1-v1.0-hybrid 274 GSGTWNQKEAAKFVYEDvgeadqerKPKRIGKKRKLRYVN--EGSVHHGEWYLEEFT 328
                              9**************99777665444444*********94..4455589******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-1520164IPR003441NAC domain
PROSITE profilePS5100516.3228173IPR003441NAC domain
PfamPF023659.8E-932156IPR003441NAC domain
SuperFamilySSF1019415.75E-10191333IPR003441NAC domain
PROSITE profilePS5100513.079194344IPR003441NAC domain
PfamPF023652.1E-6200328IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MSISSVSYSG GFAASEPSIS TMASSLPLGT QITFNPTDSQ LMQFLLQDLA PDFIITDCDL  60
FGHEEPWAIW DKYLGFRNQF NPDELYFFMP ALKKLSPNGG SRINRTIGGG SWTQKEPFKI  120
VCADEDEGRA IGVKRKLKYL NQGSDQNAQW CLDEYTSTVE GHKSCAIFRL RRNERQHKSL  180
SGICVEDFNQ TLPLGMRIFF RPTESQLIRY FIGLNIAPDF IVYDCDLFGQ EEPWEIWERY  240
SAAFNKPDLL YFYASSMKRL SSKGRGCNFD RRVGSGTWNQ KEAAKFVYED VGEADQERKP  300
KRIGKKRKLR YVNEGSVHHG EWYLEEFTSL VDEGAVLLLR RNERYKAPCL SISSDIPKEK  360
KRKRQQIDQL EDKKPKRKKV VRQLDFSDSL NRQGESGTTP TVHIQQQKPD NVDYVLEFFK  420
DVDTGSWEFP SFDDFVMACP PALEDCDLEA LASLEFPSLD EFFTACPPPL EDCDQEASTS  480
LELPSLVDLT SPSPSAGDQQ AIAAVDIDDN FILTGSCNDD DLAKWDFPIE ENCSLTSLKL  540
PSLDDLTSPS SAGDQQATAA VDIDDNFNLT GSCNDDDLAA LDFPIEEYCS LTSLLQGNCD  600
VDFKKWSMET CFVDFDEQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299307PKRIGKKRK
2360375KRKRQQIDQLEDKKPK
3361378RKRQQIDQLEDKKPKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19382.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P6SG640.0A0A2P6SG64_ROSCH; Putative transcription factor NAM family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3246722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.23e-10NAC family protein