PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna19375.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 209aa MW: 24331.9 Da PI: 10.1457

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna19375.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39	1.4e-12	10	58	43	92
S-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 43 grsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 sW+vk+ k++++ ++++GW +Fv+ + L++g+f+vF+++g++ f+ mrna19375.1-v1.0-hybrid 10 QGSWDVKV--GKSGNGqLYFKEGWLKFVNHHSLRVGEFLVFEHKGNMVFNV 58 579***..666666699*********************999888854 PP
2	B3	64.3	1.9e-20	106	193	1	87
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 f ++++ps+ k+ + +p +f+e++g+ +++ +tl d+s W+v l++ +kk++r+++++GW eF +an+L+++D+++F+ mrna19375.1-v1.0-hybrid 106 FRTIMKPSHRDKRnPYMNIPPSFVEANGIAHKS--SMTLIDPSRHHWKVDLKHwkEKKRQRVTMARGWTEFYRANKLNDRDVCIFE 189 678899999998844689*******988766..59999*******9955566666*********************** PP E-SS CS B3 84 ldgr 87 l+++ mrna19375.1-v1.0-hybrid 190 LHQK 193 8764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	0.56	1	69	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.575	1	64	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.9E-13	10	64	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.1E-13	10	70	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.19E-10	12	58	No hit	No description
Pfam	PF02362	3.7E-9	12	58	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	8.63E-21	102	194	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.8E-23	102	207	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.11E-16	104	194	No hit	No description
SMART	SM01019	6.0E-17	106	199	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.8E-17	106	193	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.857	107	209	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MDAAMIQSCQ GSWDVKVGKS GNGQLYFKEG WLKFVNHHSL RVGEFLVFEH KGNMVFNVVS 60 YGLSACEKEY HFPSDSMVNG RMTTPHETQR VKRPRDDNLE GGTHFFRTIM KPSHRDKRNP 120 YMNIPPSFVE ANGIAHKSSM TLIDPSRHHW KVDLKHWKEK KRQRVTMARG WTEFYRANKL 180 NDRDVCIFEL HQKTAVSKNV VVNVKICCH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna19375.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004306894.1	1e-147	PREDICTED: B3 domain-containing protein REM9-like
Refseq	XP_004306898.1	1e-148	PREDICTED: B3 domain-containing protein Os03g0212300-like
STRING	XP_004306893.1	1e-147	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14574	9	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	3e-19	B3 family protein

Link Out ? help Back to Top
Phytozome	mrna19375.1-v1.0-hybrid