PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna19368.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 247aa MW: 28697.3 Da PI: 9.1402 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.7 | 6.1e-16 | 78 | 213 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk........................................ 47 fY +Y+ GFs+rk k +++n+ i++r++vC +eg r++ kk+ mrna19368.1-v1.0-hybrid 78 FYLHYSVAKGFSIRKYKLAWNSENTVIIRREMVCAREGVRNKGKKSrvceedvdagledrlihktkkenkqkvlhrsdvkdseksc 163 9******************************************999**************************************99 PP FAR1 48 ......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 + ++r+r +r +C a+++vk ++ ++ ++ +++++eHnH+l+ mrna19368.1-v1.0-hybrid 164 rgkkmvKLVSSRSRRLSRQKCLAQFTVKYDRkKEGYYASSFRTEHNHPLT 213 9999887778889****************998999*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-13 | 78 | 213 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MEGIDLSTTQ TENSDGSDEA KTRDSFGNGS DDRMEVSESE DRSDDEQCTM FNGKPYKDIE 60 LDDLSNVVFK SVEEAEMFYL HYSVAKGFSI RKYKLAWNSE NTVIIRREMV CAREGVRNKG 120 KKSRVCEEDV DAGLEDRLIH KTKKENKQKV LHRSDVKDSE KSCRGKKMVK LVSSRSRRLS 180 RQKCLAQFTV KYDRKKEGYY ASSFRTEHNH PLTRLVHRQF MRTNRLVKEH DIAQRIGKLL 240 GSTCYNE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna19368.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306895.1 | 1e-169 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_004306895.1 | 1e-169 | (Fragaria vesca) |
Link Out ? help Back to Top | |
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Phytozome | mrna19368.1-v1.0-hybrid |