PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna19367.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 246aa MW: 28544.1 Da PI: 10.4549 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.4 | 3.6e-15 | 14 | 96 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 ffkvl+p ++++ l +p f+ ++ ++++ + ++ sW+vk+ k++++ ++++GW +Fv+ + L++g+f+vF+++g+ mrna19367.1-v1.0-hybrid 14 FFKVLMP--GFRKK-LGIPVAFC-LNE----NKMDAAMIQSCQGSWDVKV--GKSGNGqLYFKEGWLKFVNHHSLRVGEFLVFEHKGN 91 7888844..45554.99******.333....347899999999*******..666666699***********************9998 PP SEE.. CS B3 88 sefel 92 + f+ mrna19367.1-v1.0-hybrid 92 MVFNV 96 88854 PP | |||||||
2 | B3 | 63.8 | 2.7e-20 | 143 | 230 | 1 | 87 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 f ++++ps+ k+ + +p +f+e++g+ +++ +tl d+s W+v l++ +kk++r+++++GW eF +an+L+++D+++F+ mrna19367.1-v1.0-hybrid 143 FRTIMKPSHRDKRnPYMNIPPSFVEANGIAHKS--SMTLIDPSRHHWKVDLKHwkEKKRQRVTMARGWTEFYRANKLNDRDVCIFE 226 678899999998844689*********988766..59999***********9955566666************************* PP E-SS CS B3 84 ldgr 87 l+++ mrna19367.1-v1.0-hybrid 227 LHQK 230 8764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.2E-17 | 7 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-18 | 9 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.9E-13 | 14 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-11 | 14 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.03E-14 | 14 | 96 | No hit | No description |
PROSITE profile | PS50863 | 10.518 | 50 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.75E-20 | 139 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-22 | 140 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.09E-16 | 141 | 231 | No hit | No description |
SMART | SM01019 | 6.0E-17 | 143 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.9E-17 | 143 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.857 | 144 | 246 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MAGTRMLQSS PTKFFKVLMP GFRKKLGIPV AFCLNENKMD AAMIQSCQGS WDVKVGKSGN 60 GQLYFKEGWL KFVNHHSLRV GEFLVFEHKG NMVFNVVSYG LSACEKEYHF PSDSMVNGRM 120 TTPHETQRVK RPRDDNLEGT HFFRTIMKPS HRDKRNPYMN IPPSFVEANG IAHKSSMTLI 180 DPSRHHWKVD LKHWKEKKRQ RVTMARGWTE FYRANKLNDR DVCIFELHQK TAVSKNVVVN 240 VKICCH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna19367.1-v1.0-hybrid |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306894.1 | 0.0 | PREDICTED: B3 domain-containing protein REM9-like | ||||
STRING | XP_004306893.1 | 1e-168 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14574 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 4e-25 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna19367.1-v1.0-hybrid |