PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna19356.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23875.4 Da PI: 7.8284 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.3 | 6.3e-39 | 19 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrrkC ++C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+v++i++lqq mrna19356.1-v1.0-hybrid 19 PCGACKFLRRKCLRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPVYGCVAHIFTLQQ 104 7***********************9989********************************************************** PP DUF260 86 qleqlkaelallkee 100 q+ +l+aela+++++ mrna19356.1-v1.0-hybrid 105 QVVNLQAELAYVQAR 119 ***********9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.791 | 18 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-37 | 19 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MSSGSNNVAN NGEVSQGGPC GACKFLRRKC LRGCIFAPYF DSDQGTAHFA AVHKVFGASN 60 ASKLLLRIPA HKRLDAVVTL CYEALARVRD PVYGCVAHIF TLQQQVVNLQ AELAYVQARL 120 ATLQRLPLPP PPPQPQSHHS LPNVVASSSE LLPISNIMMH LDPIETHQCA AGQEMTSLSS 180 RLDEELIDDG DLQVLAREFV TRYLPGVRFR PPGPHQNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-36 | 17 | 113 | 9 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-36 | 17 | 113 | 9 | 104 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna19356.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306913.1 | 1e-161 | PREDICTED: LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 6e-70 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A2P6SG44 | 1e-118 | A0A2P6SG44_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004306913.1 | 1e-160 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 2e-69 | LOB domain-containing protein 31 |
Link Out ? help Back to Top | |
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Phytozome | mrna19356.1-v1.0-hybrid |