PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna19355.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 244aa MW: 25145.6 Da PI: 8.0431 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.3 | 6.9e-40 | 31 | 131 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r+da+ ++++eA+ar++dPvyG+v++i++lqq mrna19355.1-v1.0-hybrid 31 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLHHIPAHKRPDAVLTVCFEAQARLKDPVYGCVAHIFALQQ 116 7***********************9989********************************************************** PP DUF260 86 qleqlkaelallkee 100 q+ +l+ae+++l+++ mrna19355.1-v1.0-hybrid 117 QVVNLQAEISYLQAH 131 **********99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.055 | 30 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.1E-39 | 31 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MNATTNPSGG CGGGGGSSSG GSAGGGGNAG PCGACKFLRR KCVAGCIFAP YFDSEQGAAH 60 FAAVHKVFGA SNVSKLLHHI PAHKRPDAVL TVCFEAQARL KDPVYGCVAH IFALQQQVVN 120 LQAEISYLQA HLATMELPSP PPPPPPLIAQ PQLSIADLPS APMPATYDLS SLFEPMVQPT 180 AWVMQQRALL HNQHHQFVGG SSSGGVGGGG DLQALARELL HRHTGSPSGS VPCSEASPSR 240 SLSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-36 | 27 | 132 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-36 | 27 | 132 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna19355.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306912.1 | 1e-177 | PREDICTED: LOB domain-containing protein 30 | ||||
Swissprot | O81323 | 2e-81 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A2P6SG43 | 1e-128 | A0A2P6SG43_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004306912.1 | 1e-177 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 1e-78 | LOB domain-containing protein 18 |
Link Out ? help Back to Top | |
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Phytozome | mrna19355.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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