PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19324.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family BES1
Protein Properties Length: 699aa    MW: 77908.8 Da    PI: 5.1058
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19324.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822142.92.9e-44782151132
                   DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeae 80 
                              gg++r ++ +E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtty+   +g +p    ++a 
  mrna19324.1-v1.0-hybrid  78 GGARRCRPVEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTYPsnnQGPRPAgvnSTAV 163
                              6899*****************************************************************96666667776423333 PP

                   DUF822  81 aagssasaspesslqsslkssalaspvesysaspksssfpspssldsislas 132
                              +  ss+ +s+ ++++++ ++s  +s ve+ +  +ks+ +p +s +d   ++ 
  mrna19324.1-v1.0-hybrid 164 TSSSSQMVSQPTPVSLKGVTSGYPSSVEHTADHMKSVFMPGSSPYDLPAINT 215
                              33333446667777777889999******************99999877754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.8E-4080217IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.9E-177254695IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.804.4E-194255693IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.5E-100261684IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.8E-65296310IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.8E-65317335IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.8E-65339360IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060343351IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008428.6E-6422431IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007507.8E-65432454IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.8E-65505524IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.8E-65539555IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.8E-65556567IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.8E-65574597IPR001554Glycoside hydrolase, family 14
PRINTSPR008428.6E-6577587IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007507.8E-65614636IPR001554Glycoside hydrolase, family 14
PRINTSPR008428.6E-6665679IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008428.6E-6680694IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MATDMQRLIG TSEEDDEEEM DMDVKEEGDG DDDEDGEKNA DASSMMMGVD GGMATSGGNN  60
NQFQQHQQIQ EVGTPGGGGA RRCRPVEEKE RTKLRERQRR AITAKILAGL RRHGNYNLRV  120
RADINDVIAA LAREAGWVVL PDGTTYPSNN QGPRPAGVNS TAVTSSSSQM VSQPTPVSLK  180
GVTSGYPSSV EHTADHMKSV FMPGSSPYDL PAINTADGGD QTQSHPLIGG SMDDVGDKQI  240
VDMPPKLPER DFANTAYIPV YVMLPVSSAL GVINMNCELV DPDGLLKQLR VLKSVNVDGV  300
MVDCWWGIVE GHAPMDYNWN GYRRLFQMVR DLKLKLQVVM SFHECGGNVG DDVCITLPHW  360
VAEIGRSNPD IFFTDRAGRR NPECLSWGID KERVLRGRTA VEVYFDCMRS FRVEFDEFFQ  420
DDIISMIQVG LGPCGELRFP SCTVKHGWRY PGIGEFQCYD QYLLKSLRKA AEARGHSFWG  480
RGPDNAGSYN SRPHESGFFC DGGDYDGYYG RFFLNWYSQV LVDHGDRVLS LAKLAFDGTS  540
IAVKLSGIHW WYKTPSHAAE LTAGFYNSCN RDGYAAIMTM LKKHGVSLNL VCTQLPMLDE  600
NIDFQEALGD PEGLFWQVLN AAWDVCIPVS SENALLCHNR VGYNKILDNS KPLTDPDGRH  660
LSSFTYLRLS PILMERHNFM EFDRFVKRMH GEAVLDLHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-14125769211444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19324.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306787.10.0PREDICTED: beta-amylase 7
RefseqXP_011469023.10.0PREDICTED: beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A2P6SH930.0A0A2P6SH93_ROSCH; Beta-amylase
STRINGXP_004306787.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]