PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19219.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 353aa    MW: 39260.7 Da    PI: 5.036
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19219.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.5e-29130191159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK++ g+++pr+YYrCt++   gCp++k+v++s+ dp+++++tY+geH+++
  mrna19219.1-v1.0-hybrid 130 LDDGYSWRKYGQKDILGANYPRGYYRCTHKntqGCPATKQVQKSDADPTIFVVTYTGEHTCH 191
                              59***************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-29120191IPR003657WRKY domain
PROSITE profilePS5081124.903125194IPR003657WRKY domain
SuperFamilySSF1182905.1E-26129192IPR003657WRKY domain
SMARTSM007743.1E-42130192IPR003657WRKY domain
PfamPF031063.8E-27131191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEKRKSVMSN WDQKILASEL TQGKELAEKL MNQFLHPSSS QEENDLLLSK LLSTYEKALS  60
VLTRDVGSEG ESKQIQVMDS PCSFGNSSSP LSEISDQDCK SKNVFKKRKT MPKRTEEVKV  120
CSGTGQDGSL DDGYSWRKYG QKDILGANYP RGYYRCTHKN TQGCPATKQV QKSDADPTIF  180
VVTYTGEHTC HLVPQIKGKQ NVSLKQESGT PKQTPERSFS FGLRVKTENL NTREDVKEIF  240
PPFSFPSTPI ESENNVVGEH VFAAMANDFM GGSYDPTFGS PTTFESDYFG AVSPCHFGLV  300
GNDVQTSESD LSHEMLSASN SVANSPMGDF GFSLEDLDFY PFENNPECMF PQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-201291881374Disease resistance protein RRS1
5w3x_D1e-201291881374Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19219.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306689.10.0PREDICTED: probable WRKY transcription factor 46
TrEMBLA0A1S5SLA40.0A0A1S5SLA4_FRAVE; WRKY transcription factor 51
STRINGXP_004306689.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.15e-46WRKY DNA-binding protein 46