PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna19147.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 450aa MW: 51588.8 Da PI: 4.5351 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.1 | 6.6e-13 | 362 | 440 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 + +++p +fa +h ++k++ + ++g+ W+++++yr+++ r + GWk ++an+L+egD ++F l+++ ++f v+vfr mrna19147.1-v1.0-hybrid 362 DYVCIPPDFAHRHLNEKPC---VANIWLNGEIWKLRFSYRRSDTRWY---GWKAIAEANNLEEGDACLFVLINNvNSF--EVSVFR 439 5689*********777777...55556899*********99999965...**********************988888..999998 PP S CS B3 99 k 99 + mrna19147.1-v1.0-hybrid 440 T 440 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.656 | 8 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.56 | 10 | 107 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.9E-9 | 11 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-10 | 12 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.19 | 130 | 226 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-7 | 144 | 202 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.35E-8 | 144 | 202 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.489 | 349 | 441 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0043 | 355 | 441 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.73E-13 | 359 | 441 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-13 | 362 | 441 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.3E-10 | 363 | 440 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.92E-14 | 366 | 439 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MARSTSEPDI FTVMSSDLNT ETLTIPPHIR NRMVNELFKR ATFKLKNSTY CAWNVRVHKT 60 EEGGLCFKEG WEEFLYDNSL DGKGAFEFLV LEYDGKMHFS IQTYLSVQIG ALVRSSLSSG 120 YALSINLRNS LHYPGTPLLE SFLKVVIPSK FRKKHLPLRQ YTFILKNSEG ATWNCTGYHF 180 KSSLRVNAGW PDFKKDNKVD NGSKWKSISN ATDDVQGGDV GRKRTNIEIN YDFPLSSSRN 240 EEHNVYGGKD GCSNEKYGRG TFTTRRLLTR ENEIHRRMQV DDEGNEDEDE VLRRMQIDDG 300 DDEGNEDEDE GDASNGVGFE DEGNEDEYED DGDEDEDDDI NDDDYIAGLD DFPPCSKTND 360 PDYVCIPPDF AHRHLNEKPC VANIWLNGEI WKLRFSYRRS DTRWYGWKAI AEANNLEEGD 420 ACLFVLINNV NSFEVSVFRT KEKVQIDPPH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna19147.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF25653 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57720.1 | 3e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna19147.1-v1.0-hybrid |