PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19147.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 450aa    MW: 51588.8 Da    PI: 4.5351
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19147.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.6e-133624401499
                              T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                       B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                              + +++p +fa +h ++k++   +    ++g+ W+++++yr+++ r +   GWk  ++an+L+egD ++F l+++ ++f   v+vfr
  mrna19147.1-v1.0-hybrid 362 DYVCIPPDFAHRHLNEKPC---VANIWLNGEIWKLRFSYRRSDTRWY---GWKAIAEANNLEEGDACLFVLINNvNSF--EVSVFR 439
                              5689*********777777...55556899*********99999965...**********************988888..999998 PP

                              S CS
                       B3  99 k 99 
                              +
  mrna19147.1-v1.0-hybrid 440 T 440
                              6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.6568105IPR003340B3 DNA binding domain
SMARTSM010190.5610107IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-911102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-1012103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.19130226IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-7144202IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-8144202IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.489349441IPR003340B3 DNA binding domain
SMARTSM010190.0043355441IPR003340B3 DNA binding domain
SuperFamilySSF1019361.73E-13359441IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-13362441IPR015300DNA-binding pseudobarrel domain
PfamPF023629.3E-10363440IPR003340B3 DNA binding domain
CDDcd100171.92E-14366439No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MARSTSEPDI FTVMSSDLNT ETLTIPPHIR NRMVNELFKR ATFKLKNSTY CAWNVRVHKT  60
EEGGLCFKEG WEEFLYDNSL DGKGAFEFLV LEYDGKMHFS IQTYLSVQIG ALVRSSLSSG  120
YALSINLRNS LHYPGTPLLE SFLKVVIPSK FRKKHLPLRQ YTFILKNSEG ATWNCTGYHF  180
KSSLRVNAGW PDFKKDNKVD NGSKWKSISN ATDDVQGGDV GRKRTNIEIN YDFPLSSSRN  240
EEHNVYGGKD GCSNEKYGRG TFTTRRLLTR ENEIHRRMQV DDEGNEDEDE VLRRMQIDDG  300
DDEGNEDEDE GDASNGVGFE DEGNEDEYED DGDEDEDDDI NDDDYIAGLD DFPPCSKTND  360
PDYVCIPPDF AHRHLNEKPC VANIWLNGEI WKLRFSYRRS DTRWYGWKAI AEANNLEEGD  420
ACLFVLINNV NSFEVSVFRT KEKVQIDPPH
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19147.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2565322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.13e-07B3 family protein