PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19143.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 616aa    MW: 67483 Da    PI: 6.4463
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19143.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-14447493455
                              HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+eYI++Lq
  mrna19143.1-v1.0-hybrid 447 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIEYIQDLQ 493
                              799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-4953241IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.606443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.52E-16446497No hitNo description
SuperFamilySSF474592.62E-19446507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11447493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-19447505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-18449498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MKMEMGLGGG VCKEEDMAMV AAVLGTRAFD YLISSSVSSN ENLCMGIGTD ESLNSKLSDL  60
VEPPNALNFS WNYAIFWQIS RSNSGDWVLC WGDGACREPK EGEESEASRN LSLRLEDETQ  120
QKMRKIVLQK LHTLSGSTDE MNGALGLDRV TDTEMFLLAS MYFSFPRGEG GPGKCLASGK  180
QVWHSDLLKS GLDYCVRSFM AKSAGIQTIV LVPTDIGVVE LGSVRCIAEN LELLQSIRLL  240
FSTQASLTRA KPMAVSPGMS NKRDEIAGHQ NNLSIVERGG EGVPKIFGQD LNSGNPGRPR  300
YREKLAVRKV EERPWDAYSN GNRIAFSSPQ NGIHGSSWGQ SHVGVKQGSP AGVYASQGPV  360
NNLQELANGG RDDFRLKPYQ PQKQTPMQID FSGATSRPLA VARPIVIESE NSDAEAPFKE  420
ELPGTAEEKR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS  480
LLGDAIEYIQ DLQRKLKDME SERESAGGTS RDTSALVANP SSENQIQAHQ VDIQAGQDEV  540
IVRVSCPIDS HPASRVIQAF KEAQISVVES KFTAANDSVF HTFVVKSQGS EQLTKEKLIA  600
AFSKESNSLQ SLSSVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-27441503264Transcription factor MYC2
5gnj_B1e-27441503264Transcription factor MYC2
5gnj_E1e-27441503264Transcription factor MYC2
5gnj_F1e-27441503264Transcription factor MYC2
5gnj_G1e-27441503264Transcription factor MYC2
5gnj_I1e-27441503264Transcription factor MYC2
5gnj_M1e-27441503264Transcription factor MYC2
5gnj_N1e-27441503264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428436KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19143.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306657.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2P6SII10.0A0A2P6SII1_ROSCH; Putative transcription factor bHLH family
STRINGXP_004306657.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]