PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19019.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 345aa    MW: 37721.9 Da    PI: 8.4875
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19019.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30168226259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+ver ++dp ++++tY+ eHnh+
  mrna19019.1-v1.0-hybrid 168 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERHRSDPGMFIVTYTAEHNHP 226
                              79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081134.601162228IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-30162228IPR003657WRKY domain
SuperFamilySSF1182901.96E-26165228IPR003657WRKY domain
SMARTSM007742.8E-37167227IPR003657WRKY domain
PfamPF031061.3E-25169226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEDDWDLTAV VRGCSTATTT TTTTTTTTTT KPTTSFISDL HHHFHSSPLL SSSFGQQGFV  60
SNNTSQTQTQ TQSFSVLPIV PDPIKPTSAI EELHDLYKPF FPKSHHKIHT PSLLSPPPQI  120
TPQPNFSSHQ QLHKHQPKLS ATNTTQRSKK RKNLLKKVCQ VPAESLSSDV WAWRKYGQKP  180
IKGSPYPRGY YRCSSSKGCM ARKQVERHRS DPGMFIVTYT AEHNHPAPTH RNSLAGSTRH  240
KPVSSPQSGS VTGGDSTKPK GGSPSSPATS AEEEVGRSVT MMDAKEEKQS PLADEDETEF  300
FRVCDTIVTD DFFVGLDGLA GDYFSDHSTA SFGGPWSTAT AASSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-22155229580Disease resistance protein RRS1
5w3x_D6e-22155229580Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19019.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470488.10.0PREDICTED: WRKY transcription factor 22
TrEMBLA0A2P6SHY30.0A0A2P6SHY3_ROSCH; Putative transcription factor WRKY family
STRINGXP_004308337.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.18e-66WRKY family protein