PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19013.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 177aa    MW: 19431.9 Da    PI: 9.0173
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19013.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.93e-11147168122
                              ---SS-EEEEEEE--TT-SS-E CS
                     WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                              ldDgy+WrKYGqK vk+s +pr
  mrna19013.1-v1.0-hybrid 147 LDDGYRWRKYGQKAVKNSLYPR 168
                              59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-12133168IPR003657WRKY domain
SuperFamilySSF1182902.75E-9140169IPR003657WRKY domain
PROSITE profilePS5081112.794142177IPR003657WRKY domain
SMARTSM007740.0013147173IPR003657WRKY domain
PfamPF031067.1E-8148172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEGGQEHMNP PPTSSSTPQL SLPLILPPQN PSYQLFTPSG LNPPPLPLLQ PHDHQLLNPI  60
DIDWISLLSG QAGHHGLVGH DQLNNCRAVP GMADLSTASG SAGENAIEGD DDREQKGSKK  120
RKGGGYKMRK ATRPRFAFQT RSADDILDDG YRWRKYGQKA VKNSLYPRLI HPLNLSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19013.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306730.11e-122PREDICTED: probable WRKY transcription factor 24
TrEMBLA0A2P6SI003e-87A0A2P6SI00_ROSCH; Putative transcription factor WRKY family
STRINGXP_004306730.11e-121(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.22e-17WRKY DNA-binding protein 43