PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18961.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 398aa    MW: 42943.5 Da    PI: 9.3438
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18961.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.15.6e-3752131381
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 
                              +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++++a ++  ++s +  
  mrna18961.1-v1.0-hybrid  52 PKRTSTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTIPAIAMsVNGSLKIP 131
                              799************************************************************99999555322222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-3055131IPR005333Transcription factor, TCP
PROSITE profilePS5136927.14157111IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MLQNQEVKPG QVDPTGRGGT DSPPSQPPLV MKEEQEPEQR SSQAITVAVN KPKRTSTKDR  60
HTKVEGRGRR IRMPATCAAR IFQLTRELGH KSDGETIRWL LEHAEPAIIA ATGTGTIPAI  120
AMSVNGSLKI PTTAPDSGDP AKKRKRPCNS DYVDLNDTVS AGLAPLTTTT QQQPTPPPPQ  180
PVAQSMVPMW AVTSNGVVPG TFFMVPQTQS PHMFTFPATA NAPSPFLNMS ARPISSFVSS  240
MGTNTLSFIS PASTPPPASA DITHSTVATT TTSLRDKTEL QFMSGRGKWG RIRRGEGPTV  300
GFIGLGFCAV DRVGAGPNGW WGRQTGPFEH YCRGGGRVWW PLHGQEGRER EIGADGEWRH  360
VASLEVVGLF CWWGPEDSES DVGENGNVTV KMNMGRRG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00635PBMTransfer from PK14653.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18961.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308417.10.0PREDICTED: transcription factor TCP9
TrEMBLA0A2P6SGH21e-139A0A2P6SGH2_ROSCH; Putative transcription factor TCP family
STRINGXP_004308417.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.16e-54TCP family protein