PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18957.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 375aa    MW: 42769.9 Da    PI: 5.0821
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18957.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-13250334798
                              .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                       B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                               ++vl sg l +p++f+ + +g+ ++  + +le+ s  sW+v +  ++ +++++l++GW+eFv  n Lk g+ v++++ g+ +f  
  mrna18957.1-v1.0-hybrid 250 DESVLHSGKLQIPREFCWNSDGVVPQ--QCRLETMS-GSWNVDV--KRIGREIFLEEGWEEFVVGNSLKLGEYVTLHYYGHAKF-- 328
                              78999************999888666..58888855.59*****..*******************************9987666.. PP

                              EEEEE- CS
                       B3  93 vvkvfr 98 
                              +v ++ 
  mrna18957.1-v1.0-hybrid 329 FVEIYG 334
                              888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.67E-16240338IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-14240337IPR015300DNA-binding pseudobarrel domain
CDDcd100176.16E-9243333No hitNo description
PROSITE profilePS5086311.138244336IPR003340B3 DNA binding domain
SMARTSM010199.8E-9245336IPR003340B3 DNA binding domain
PfamPF023626.2E-11250333IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEVFEIDNSA IQCRIAYNLP WNTCLKKKTL GMQGAWEIEE ATLVYEIITL YMRKREREET  60
AHPFASNPYC RKFLENMVNL LPVPVLVSDG GFGSTFSLHL SDPSIHPISN FAKALEGQAA  120
HKYTDNLDAE VQPEQVLGMK EMAIPIFAGI LSALRRVIAR RVSLKNQLKR RLHALTVASA  180
TCFMFPVAMW DIIIGSPSSS SEKMPFSTWA FLSTIFFGVI LIFYVDSIAE ESRRRKDEDT  240
HCPGFYKCLD ESVLHSGKLQ IPREFCWNSD GVVPQQCRLE TMSGSWNVDV KRIGREIFLE  300
EGWEEFVVGN SLKLGEYVTL HYYGHAKFFV EIYGHNHCER SKASKTDRFL EDEDEDDVII  360
IDSDSDSDDV LMWF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18957.1-v1.0-hybrid
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.18e-12B3 family protein