PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18956.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 296aa    MW: 33674.5 Da    PI: 8.1538
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18956.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.39.8e-1222105697
                              ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                       B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                              + ++vl +g l +pk+f+   g ++++     l+++ g sW+v +  ++ ++ ++l+kG +eFv  n Lk+g+++v++++g  +f 
  mrna18956.1-v1.0-hybrid  22 VDESVLHKGKLQIPKDFCWFDGVVPQQ---CHLQTLYG-SWNVDV--KRIKRVFFLEKGLEEFVVGNSLKQGESLVLQYVGIAKF- 100
                              4689999***********888877655...56666555.9*****..****9***************************986666. PP

                              .EEEEE CS
                       B3  92 lvvkvf 97 
                               +v+++
  mrna18956.1-v1.0-hybrid 101 -FVQIY 105
                              .77775 PP
2B331.72.6e-102202891994
                              -HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3  19 pkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                              p++f+++++++  ++++l++e+  ++  W   +  +k+s r  +++GW  F k+n++kegD++ F+l+++s++  v+
  mrna18956.1-v1.0-hybrid 220 PRSFLRNISKP--KKVKLQVENvCWNVIWLHPY--NKSS-R--FSGGWVPFFKENKVKEGDICDFELISKSTEVAVI 289
                              99999888744..66778877755556666666..6555.4..89**********************9765543444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-1213110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-1013109IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-1118108IPR003340B3 DNA binding domain
PfamPF023626.7E-923105IPR003340B3 DNA binding domain
CDDcd100176.26E-725105No hitNo description
PROSITE profilePS508638.45957108IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-11177293IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-11177295IPR015300DNA-binding pseudobarrel domain
CDDcd100172.54E-9182295No hitNo description
PROSITE profilePS508639.643202296IPR003340B3 DNA binding domain
SMARTSM010190.0052210292IPR003340B3 DNA binding domain
PfamPF023622.5E-8218289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGSCSRRRKD EDTNCPGFYK CVDESVLHKG KLQIPKDFCW FDGVVPQQCH LQTLYGSWNV  60
DVKRIKRVFF LEKGLEEFVV GNSLKQGESL VLQYVGIAKF FVQIYGLNHC ERSKASEISL  120
VDSENDEEDV IIIDSDSDPE AQDSEISLDS ESKCPRDLVC GRKVSRRGGV RNIATISSSG  180
NPCFSIRICR SHVNRGPLEF LVLDYTNVPF VSNFGAQLTP RSFLRNISKP KKVKLQVENV  240
CWNVIWLHPY NKSSRFSGGW VPFFKENKVK EGDICDFELI SKSTEVAVIK VTIRRM
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18956.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308414.10.0PREDICTED: B3 domain-containing protein At2g16210-like isoform X1
TrEMBLA0A2P6R2S61e-116A0A2P6R2S6_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004308414.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2564123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.22e-07B3 family protein