PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna18952.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 185aa MW: 21626.3 Da PI: 7.2343 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 30.8 | 5.1e-10 | 22 | 81 | 12 | 73 |
HTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 12 ksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 + l +p +f +++ +++k++ + d +rsWev + r++ + +vl++GWk+F +a+g mrna18952.1-v1.0-hybrid 22 NDTELEIPLSFSNKYmveDNEKHG--SVH-LDGYNRSWEVSV--RRRHDFVVLGRGWKKFINAHG 81 5566899****9999874333333..455.66789*******..*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.06E-9 | 6 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-9 | 7 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-7 | 22 | 81 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-4 | 109 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-6 | 109 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MEKLSPNDLP FFLAKFDKAG INDTELEIPL SFSNKYMVED NEKHGSVHLD GYNRSWEVSV 60 RRRHDFVVLG RGWKKFINAH GPFYRRLVEA GMGQFQFRLK SYPWIRDDVE LTCNNRNYII 120 FGAGWQEFVE AYEIHPNDWV HLRFVPESRS IVVTAFRWTD RVRYAATQAP VPSLDPHPSS 180 SSEST |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna18952.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309848.1 | 5e-71 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_004308413.1 | 1e-119 | (Fragaria vesca) |
Link Out ? help Back to Top | |
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Phytozome | mrna18952.1-v1.0-hybrid |