PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18928.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 427aa    MW: 45946.1 Da    PI: 9.2836
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18928.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_166.54.6e-21285347163
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              e+elkrerrkq+NRe+ArrsR+RK+ae++eL++kv++L a N++Lk+e+++l + +++l+ e+
  mrna18928.1-v1.0-hybrid 285 ERELKRERRKQSNRESARRSRLRKQAETDELARKVEALNADNESLKSEINRLAESSDRLRVEN 347
                              89********************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.4E-331100IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.7E-18131263No hitNo description
Gene3DG3DSA:1.20.5.1706.1E-16279344No hitNo description
SMARTSM003383.2E-20285349IPR004827Basic-leucine zipper domain
PfamPF001701.9E-18285347IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.265287350IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.13E-10288343No hitNo description
CDDcd147021.24E-18290338No hitNo description
PROSITE patternPS000360292307IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGNDDEVKSV KTEQSSSPLT ADPKNHTNQT NIHVYPDWAA MQAYYGPRVP MPPYYNSPAA  60
SGHAPHPYMW GPPQTMMSPY GAPYAAIYSH GSVYAHPAVP LGSNGQGVPL SPAAANPSSV  120
ETPTKSSGNN DRGLVKRSKG FDALEMSIGN GNVENAEGEA DQSLSKSSAT EGSSSDGNAS  180
RANQSRRKRT REGTPTTVVA IAGDQKPEMQ ASPASAKDVN AASNKVLGTT VAAVGVPAKL  240
VRPAVSPGMT TVLELKNPSS LNLASATSVQ QPRAVLPPET WLQNERELKR ERRKQSNRES  300
ARRSRLRKQA ETDELARKVE ALNADNESLK SEINRLAESS DRLRVENASL LEKLKKARVG  360
RMEEIIMNIE DNRVEAISTE NLLSRVNNSG AIARDVEEEG SMYEKKATAK LHQLLDASPR  420
TDAIAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301307RRSRLRK
2301308RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18928.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306702.10.0PREDICTED: common plant regulatory factor 1-like
SwissprotQ990891e-136CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A2P6SI570.0A0A2P6SI57_ROSCH; Putative transcription factor bZIP family
STRINGXP_004306702.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-118G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]