PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna18922.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 302aa MW: 34560.6 Da PI: 5.058 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 95 | 146 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp k+kr +lg+f taeeAa ++++ + +l+g mrna18922.1-v1.0-hybrid 95 KKFRGVRQRP-WGKWAAEIRDP---LlKSKRRWLGTFNTAEEAALRYDREAIELRG 146 59********.**********8...3456*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.52E-30 | 95 | 162 | No hit | No description |
Pfam | PF00847 | 5.1E-11 | 96 | 146 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-20 | 96 | 153 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-27 | 96 | 152 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.456 | 96 | 154 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-32 | 96 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MDSSHPTTKF TEKRFVTDKL VKPLRHLALP KIVRISFTDQ DATDTSSDDE EQQQQQRVTR 60 RVINEVRIEE SEAVRVLLAK NQQQKPINSL PEEKKKFRGV RQRPWGKWAA EIRDPLLKSK 120 RRWLGTFNTA EEAALRYDRE AIELRGPNAR TNIIPPPKFP VSDHRSSSNE SISINLSSSN 180 LCSSNMSTSM DQIVVIDEYD SGKECQSNIR SPTSVLSSSD NEWRPVSKEK DESHFVGYFD 240 GVINPEAILF GISEPTLWEE MNMVPETMLR EDLSDISLDS VGDFRSCKWN AEDFFQDQCG 300 GF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 95 | 152 | 1 | 58 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna18922.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468950.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | A0A3Q8TA05 | 0.0 | A0A3Q8TA05_FRAAN; Transcription factor ERF51 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46310.1 | 8e-29 | cytokinin response factor 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna18922.1-v1.0-hybrid |