PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna18815.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 314aa MW: 35430.1 Da PI: 7.3173 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.7e-08 | 28 | 72 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT+eE +++ +a +++ ++ +W ++a ++ g+t +++ + mrna18815.1-v1.0-hybrid 28 EWTAEENKRFENALALYDKDtpdRWQKVAYLIP-GKTVGDVIKQYK 72 5********************************.****99988775 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 7e-15 | 139 | 183 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky mrna18815.1-v1.0-hybrid 139 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 183 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.088 | 24 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4E-9 | 25 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.09E-7 | 28 | 74 | No hit | No description |
SuperFamily | SSF46689 | 2.48E-11 | 28 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.9E-7 | 28 | 72 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.193 | 132 | 188 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.35E-17 | 133 | 187 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.9E-17 | 135 | 187 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.8E-13 | 136 | 186 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-13 | 136 | 183 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.83E-11 | 139 | 183 | No hit | No description |
Pfam | PF00249 | 2.6E-12 | 139 | 183 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MYRGIEVLSP ASYIQNSNWL FQESKGAEWT AEENKRFENA LALYDKDTPD RWQKVAYLIP 60 GKTVGDVIKQ YKELEEDVSD IEAGLIPIPG YSNNNSFTLE WVDDQGFDGL KQYYSVGGNG 120 GKRGSSTRPS EQERKKGVPW TEEEHRQFLM GLKKYGKGDW RNISRNFVTT RTPTQVASHA 180 QKYYIRQLTG GKDKRRSSIH DITTVNVSDT KSGSVGSSQS TTRSSTSQDH ESAVVVQSQQ 240 HPKMSNKQQF DWKVSNEGPQ MVFNSMNGNA IIGPFIGISS PVPKLEEQDF FSGSTFHGSQ 300 FDHHNARFEM QYQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-17 | 26 | 91 | 8 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna18815.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004302668.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-107 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2P6R9B0 | 0.0 | A0A2P6R9B0_ROSCH; Putative transcription factor MYB/SANT family | ||||
STRING | XP_004302668.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-117 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna18815.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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