PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna18743.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 199aa MW: 22775.1 Da PI: 10.237 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 21.4 | 8.1e-07 | 45 | 133 | 15 | 88 |
FAR1 15 rkskskkskrngeitkrtfvCskegkreeekkk............tekerrtra..etrtgCkaklkvkkek.dgkwevtkleleH 85 r+s s + ++++ k +f+C ++g+ ++ k+ +ek++r+r ++++gC +l+ ++ + w+++ + H mrna18743.1-v1.0-hybrid 45 RRSDSGQIGNKKKRPKVRFCCERNGQYKSCKSLkfdtimeesnveSEKKKRPRLtgTKKCGCPFSLRGTNIGnGDDWKLEVVCGVH 130 33333344667777899*********99988878*********995555555541166777777777666667999********** PP FAR1 86 nHe 88 nH+ mrna18743.1-v1.0-hybrid 131 NHA 133 **7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08731 | 1.6E-6 | 21 | 133 | IPR014842 | Transcription factor AFT |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MKVEVDDVLD HTTQFTTDKV FESKVEMIEW TRSEGIRNNF VIVIRRSDSG QIGNKKKRPK 60 VRFCCERNGQ YKSCKSLKFD TIMEESNVES EKKKRPRLTG TKKCGCPFSL RGTNIGNGDD 120 WKLEVVCGVH NHAASKYLHG HSFVGRLSEE ENSLLVDMST SLIRPKDILT AIKRRNSKNV 180 TTMKTIYNAR QRYRDPAK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 102 | KKKRPRLTGTKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna18743.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468456.1 | 1e-147 | PREDICTED: uncharacterized protein LOC105352626 | ||||
TrEMBL | M5W105 | 1e-68 | M5W105_PRUPE; Uncharacterized protein (Fragment) | ||||
STRING | XP_004305166.1 | 1e-139 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF180 | 11 | 22 |
Link Out ? help Back to Top | |
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Phytozome | mrna18743.1-v1.0-hybrid |