PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18718.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 599aa    MW: 66747.3 Da    PI: 7.4057
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18718.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.9e-103934301954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  mrna18718.1-v1.0-hybrid 393 FEHflHPYPTDTDKISLAKQTGLSRSQVSNWFINARVR 430
                              554459******************************87 PP
2BELL109.81.6e-35256324472
                     BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              e ++kk++L+s+l+eV++rYkqy++q+q+v+ sFe vaglg+a+pY++lA ka++rhF+cLk+ai++q+
  mrna18718.1-v1.0-hybrid 256 ESRRKKSRLISMLDEVYRRYKQYYHQMQAVVTSFEYVAGLGNAAPYANLAIKAMTRHFKCLKNAITDQL 324
                              7899**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-52187322IPR006563POX domain
PfamPF075265.3E-42192321IPR006563POX domain
PROSITE profilePS5007112.179371434IPR001356Homeobox domain
SMARTSM003899.6E-10374438IPR001356Homeobox domain
CDDcd000867.30E-13374435No hitNo description
SuperFamilySSF466896.84E-17376441IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-27377438IPR009057Homeodomain-like
PfamPF059205.7E-19391430IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRRDKLR FLPGPPHPVC VEPGPHHLHG CAAATAFYEP TSISLLSSSD  60
LLSCPKEESH VNLMPYMNSS QPSSSLHNFR PPYLDPQPSS FANSVQDINS LNNLFLYPSQ  120
QNHHHHHHQL RGDFHNEQGL FRPEPLSLSL SSQPIEVHNL QRYGYSGIND GVHGSRSPGP  180
TPLGPFTGYA SILKGSRFLK PAQQLLEEFC DVGSSSRDIY AAVSRTMTDE SSSFLDDPPI  240
ESLDDPASVG GADGGESRRK KSRLISMLDE VYRRYKQYYH QMQAVVTSFE YVAGLGNAAP  300
YANLAIKAMT RHFKCLKNAI TDQLQYSRSS RDSITYVSRD KDEAIPMLRS NTTRGMYGHR  360
SFQSTEFCEP QPVWRPQRGL PERAVTVLRS WLFEHFLHPY PTDTDKISLA KQTGLSRSQV  420
SNWFINARVR VWKPMVEEIH MLETRQAHRN ADRSDDHDHL PSTNSVASEN PSTSTYRARD  480
TASKRPRSEF PDVTVASTHQ QLNMSYNNLP NHLHHVGQVG GSMAGGSTSG VSLTLGLHHQ  540
NNGIGLSEPP YAIINTPQRF GLGLEGSSDG YTMGGFDAQN RHFGRDVMGG QLLRDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-15380438563Homeobox protein Meis2
4xrm_B1e-15380438563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18718.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302698.10.0PREDICTED: BEL1-like homeodomain protein 9 isoform X1
SwissprotQ9LZM81e-112BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A2P6R9J60.0A0A2P6R9J6_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004302698.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-102TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]